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ミスマッチ/ギャップを許容 ミスマッチのみ許容 : 塩基まで (検索する配列長の25%まで)
双方向を検索 +方向のみ検索 -方向のみ検索

2024-03-30 00:27:00, GGGenome : Takifugu rubripes genome, fTakRub1.2 (Jun, 2019)

Summary:

Results:

検索語に色がつきます(ミスマッチ挿入欠失

NC_042290.1 Takifugu rubripes chromosome 6, fTakRub1.2, whole genome shotgun sequence
position: 2918971-2918985
GATTTAAAAATATATATATTTATTTTTTAC2918971TTCATTGACAACATTGTCTTAGTTGTGACTGATTAATACTATGAT
NC_042294.1 Takifugu rubripes chromosome 10, fTakRub1.2, whole genome shotgun sequence
position: 5132124-5132138
TATATTTTTATAATACAGATTATAATTCTT5132124TTCATTGACAACATTTCATTTTCTATTCAAAGTGGATTTTTTCAC
NC_042303.1 Takifugu rubripes chromosome 19, fTakRub1.2, whole genome shotgun sequence
position: 5646396-5646410
ACCTCTCACTCGCCACACTAGTTAAGTTTT5646396TTCATTGACAACATTGATTTCCAAGCCATCCGAATTTTTGTTTGT
NC_042306.1 Takifugu rubripes chromosome 22, fTakRub1.2, whole genome shotgun sequence
position: 14530880-14530894
TGCCACTGTTCTTTTACTGGACCACTGCAG14530880TTCATTGACAACATTAAATATCCCATACATGATTTAAAGACTATT
NC_042297.1 Takifugu rubripes chromosome 13, fTakRub1.2, whole genome shotgun sequence
position: 5541261-5541275
TTGTAGTAAAATTATTTTCCCCTTAAACCA5541261AATGTTGTCAATGAAGAAATGGGCTATCCTTATGAATATTTGTAC

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : http://gggenome.dbcls.jp/ja/GCF_901000725.2/TTCATTGACAACATT
lang : ja | db : GCF_901000725.2 | k : 0 | strand : | nogap : | query_string : TTCATTGACAACATT | format : html | download : | debug :

0.009 | 0.009 | search_start;
0.084 | 0.075 | search_plus_done; http://172.18.8.72:28874/match?q=TTCATTGACAACATT&k=0&no_gap=0&offset=0&limit=50
0.090 | 0.007 | search_minus_done; http://172.18.8.72:28874/match?q=AATGTTGTCAATGAA&k=0&no_gap=0&offset=0&limit=46
0.091 | 0.001 | cgi_end;

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