GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2024-04-24 09:13:50, GGGenome : Glycine max genome, Wm82.a2.v1/v2.0 Phytozome Gmax_275

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Chr01:6345964-6345978
TTCACAATTACCGTCAGCTTTCACATTCAC6345964AATGTTGTCAATGAAACCCTGTATAAATGGCTCAAATTGATCCAA
Chr01:8007766-8007780
TCCATAGTTTCCGTCAGCTTTGACATCCAC8007766AATGTTGTCAATGAAATCGTGGATAAATGGCTGAATTGATCCAAC
Chr01:14752215-14752229
TCCACAGTTATTGTCAGCTTTGACATCCAC14752215AATGTTGTCAATGAAATCATGTATAAATGGATGAAATTGATCCAA
Chr01:43047626-43047640
TCCATAGTTTCCGTCAGGTTTGACATCCAC43047626AATGTTGTCAATGAAATCTTGCATAAATGGCTGAAATTGATCCAA
Chr02:23914118-23914132
TCCATAGTTACCATATGCTTTCACATCCAC23914118AATGTTGTCAATGAAATCCTGTATAAATGGCTCAAATTGATGCAC
Chr03:23174134-23174148
CCCACAGTTTCTGTTAGCTTTGACATCGAC23174134AATGTTGTCAATGAAATCGTGGATAAATGGCTAAAATTGATCCAA
Chr04:8282839-8282853
TCCATAGTTACCATCCGCTTTCACATCCAT8282839AATGTTGTCAATGAAATCCTGTATAAATTGCTCAAATTGATCCAA
Chr04:9940906-9940920
TCCATAGTTTCCGTCAGGTTTGACATCCAC9940906AATGTTGTCAATGAAATCCTGCATAAATGGCTGAAATTGATCCAA
Chr04:14303116-14303130
TTTTTTACAACATCGATTTTACAAAACATC14303116AATGTTGTCAATGAAGAACAACATTGGTTTTTATTAAAACCGATG
Chr04:20936724-20936738
GCTGGGGTAGATGGCAAACGTTGTCTGGAA20936724AATGTTGTCAATGAAGTTGTGTTGCTTGCTGCTCGTAGAGGTAAC
Chr04:46342266-46342280
TCCACAGTTACCGTCAACTTTGACATCCAC46342266AATGTTGTCAATGAAATCGTGTATAAACGGCTGAAATTGATCCAA
Chr05:20031250-20031264
CCCATAGTTTCCATCAGCTTGGACATCAAT20031250AATGTTGTCAATGAAGTCGTGGATAAATGGCTGAAATTGATCCAA
Chr07:14680829-14680843
TCCACAGTTATCATCCGCTTTCACATCCAC14680829AATGTTGTCAATGAAACCCTATATAAATGGCTCAAATTGATCCAA
Chr07:15138110-15138124
TCCACAGTTACTGTCAGCTTTCACATCCAC15138110AATGTTGTCAATGAAATCCTATATAAATGGCTCAAATTGATCCAA
Chr07:18317747-18317761
TTGAGTTTGAGACAATGATTGGGTAAGCCA18317747AATGTTGTCAATGAATTAAGAAATTCAGTTGTGAGTGAGCGAAAA
Chr07:26359494-26359508
TCCACAGTTACCGTCAGCTTTCACATCCAC26359494AATGTTGTCAATGAAACCCTGTATATAAATGGCTTAAATTGATCC
Chr07:39595393-39595407
TCCACAGTTTCCATCAACTTTGACATCCAC39595393AATGTTGTCAATGAAGTCGTGGATAAATGACTGAAATTGATCCAA
Chr08:19256329-19256343
TCCACAGTTACCATCCGCTTTCACATCCAC19256329AATGTTGTCAATGAAACCTTGTATAAATGACTCAAATTGATCCAA
Chr08:19374567-19374581
TCCATAGTTACCGTCAGCTTTGACATCCAC19374567AATGTTGTCAATGAAATCGTGGATAAATGGTTGAAATTGATCCAA
Chr08:36736624-36736638
TCCATAGTTACCGTCAGCTTTGACATCCAC36736624AATGTTGTCAATGAACTATGCTTCATCGAAGAATTACTATTTTGC
Chr10:8725914-8725928
TCCACAGTTACCATTCGCTTTAACATCCAC8725914AATGTTGTCAATGAAACCCTGTATAAATGGCTCAAATTGATCCAA
Chr10:12449988-12450002
TCCACAGTTACCGTCAACTTTGACATCCAC12449988AATGTTGTCAATGAAATCGTGTATAAACGGATGAAATTGATTCAA
Chr10:32136079-32136093
TCCACAGTTACCGTCCGCTTTCACATCTAC32136079AATGTTGTCAATGAAACCTTGTATAAATGGCTTAAATTGATCCAA
Chr11:19820637-19820651
TCCACAGTTACCGTCACCTTTGACATCCAC19820637AATGTTGTCAATGAAATCGTGTATATTTCTTTGATTGTTGTACAA
Chr12:32583121-32583135
TCCACAGTTATCGTCAGCTTTGACATCCAC32583121AATGTTGTCAATGAACTCGTGTATAAACGGCTGAAATTGATCCAA
Chr12:33544814-33544828
TCCACAGTTTCCGTCAGGTTTGACATCCAC33544814AATGTTGTCAATGAAATCCTACATAAATGGCTGAAATTGATCCAA
Chr12:34032988-34033002
TCCACAGTTACCGTCTACTTTCACATCCAC34032988AATGTTGTCAATGAAATCTTGTATAAATGGCTCAAATTGATCCAA
Chr12:39732038-39732052
CAAAAAACAACATTAATTTAAAAAAAAACC39732038AATGTTGTCAATGAAAAACAAAATCGGTTTTTCTTAAAATCAATG
Chr13:5228143-5228157
TCCACAGTTACCATCAGCTTTCACATCCAC5228143AATGTTGTCAATGAAATCCTATATAAATGGCCCAAATTGATCCAA
Chr13:7771669-7771683
CCCACAGTTTCTGTCAAGTTTGACATCCAC7771669AATGTTGTCAATGAAATCCTACATAAATGGCTGAAATTGGTCCAA
Chr13:10035204-10035218
TCTACAGTTACCGTCCGTTTTCACATCCAC10035204AATGTTGTCAATGAAACCCTGTATAAATGACTCAAATTGATCCAA
Chr15:14578876-14578890
TCCACAATTTTCATTAGGTTTGACATCCAC14578876AATGTTGTCAATGAAATCCTGGATAAATGGCTGAAATTGATCCAA
Chr15:21399431-21399445
TCCACAGTTACCGTCAGCTTTGACATCCAC21399431AATGTTGTCAATGAAATCATGTATAAATGGCTGAAATTGATCCAA
Chr17:29055288-29055302
TCCAAAGTTACCATCCACTTTCACATCCAC29055288AATGTTGTCAATGAAACCCTGTATAAATGGCTCAAATTGATCCGA
Chr17:30971701-30971715
TCCACAGTTATCGTCAGCTTTGACATCCAC30971701AATGTTGTCAATGAAATCATGTATAAATGGATGAAATTAATCCAA
Chr18:25899622-25899636
GCTGGGGTAGATGGCAAACGTTGTCTGGAA25899622AATGTTGTCAATGAAGCTGTGTTGCTTGTTGCTCATAGAGGTAAC
Chr18:40092112-40092126
CTATATCATACCGTCCACTTTCACATCCAC40092112AATGTTGTCAATGAAACCCTGTATAAATGGCTCAAATTGATCCAA
Chr18:44421009-44421023
TCCATAGTTACCGTTTGCTTTCACATCCAC44421009AATGTTGTCAATGAAACCCTGTATAAATGACTCAAATTAATTCAA
Chr19:5795300-5795314
ACTACTGGTTTAGTAGGTGCTGATCTGGCA5795300AATGTTGTCAATGAAGCCGCGTTGCTTGCTGCTCGTAGAGGTAAC
Chr20:7746379-7746393
ATCTAAGGTTTACTAGGTAGTGATCTGGCA7746379AATGTTGTCAATGAAGCTGTGTTGCTTGCTACTTGTAGAGGTAAC
Chr20:31372841-31372855
TCCATAGTTACCATCAGCTTTGACATCCAC31372841AATGTTGTCAATGAAATCGTGTATAAATGGCTAAAATTGATCCAA
Chr20:47369071-47369085
TTGGTGCTTAATTAGCCTTCTTTTTTTCAC47369071AATGTTGTCAATGAAATTCGAAATCATGCCTATATATATACTCAC
scaffold_21:2603991-2604005
AATGATGTAGTTGATGATGGAGGGAGTCAA2603991AATGTTGTCAATGAAAGTGGGGATGTTGTTTGTCATAATGAAAAT
scaffold_25:694231-694245
TCCATAGTTACCGTCTACTTTCATATCCAT694231AATGTTGTCAATGAAACCCTGTATAAATGGCTCAAATTGATCCAA
Chr01:25668425-25668439
TTGGATCAATTTGAGCCATTTATACAGGGT25668425TTCATTGACAACATTGTGGATGTGAAAGCAGACAACAATTGTGGA
Chr02:8356198-8356212
GTGGATCAATTTCATCCTGTTATACACGAT8356198TTCATTGACAACATTGTGGATGTCAAAGCTGACGGTAACTGTGGA
Chr03:2400240-2400254
TTCGATCAATTACATTCATTTATACACAAT2400240TTCATTGACAACATTGTGGATGTCAAAGCTGATAGTAACTGTGGA
Chr03:11526542-11526556
TTGGATCAATTTCAACCATTTATACACAAT11526542TTCATTGACAACATTGTAGATGCCAAAACTGACAGTAACTGTGGA
Chr04:6988352-6988366
TTGGATCAATTTCATCCGTTTATACATGAT6988352TTCATTGACAACATTGTGGATGCCAAAGCTGACGGTAACTGTGGA
Chr04:8305503-8305517
TTGGATCAATTTCATCCGTTTATACATGAT8305503TTCATTGACAACATTGTGGATGTCAAAGCTGACGGTAACTGTGGA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : http://gggenome.dbcls.jp/Gmax_Wm82.a2.v1/AATGTTGTCAATGAA
lang : en | db : Gmax_Wm82.a2.v1 | k : 0 | strand : | nogap : | query_string : AATGTTGTCAATGAA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.083 | 0.074 | search_plus_done; http://172.18.8.74:28791/match?q=AATGTTGTCAATGAA&k=0&no_gap=0&offset=0&limit=50
0.109 | 0.026 | search_minus_done; http://172.18.8.74:28791/match?q=TTCATTGACAACATT&k=0&no_gap=0&offset=0&limit=6
0.112 | 0.003 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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