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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2024-04-18 20:39:40, GGGenome : Helianthus annuus genome, HanXRQr1.0 (Dec, 2015)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

HanXRQChr01 len=153905722 previd=01
position: 44932537-44932551
AGCCTTCTATGTTCTTCATTGTTAATGGCG44932537TTCATTGACAACATTCTTGGGGATGGCAAACTGATTTCTGCAGGT
HanXRQChr01 len=153905722 previd=01
position: 108626125-108626139
TGCATTAGTTGCATGTCTTCAAGTCGGTTT108626125TTCATTGACAACATTGTTGTCAGGTTTGTTTCGTAATATTACTAT
HanXRQChr02 len=180951721 previd=02
position: 149376339-149376353
AAGCCGTACTTAGACAAATTCGTCATCGTT149376339TTCATTGACAACATTCTTATCTACTCGAAGAACCGAGCTGACCAT
HanXRQChr03 len=168485022 previd=03
position: 40963356-40963370
AAGCTGTATCTCGACAAATTCATCATAGTG40963356TTCATTGACAACATTTTAATATACTCACGACCGGCAGACGAACAC
HanXRQChr04 len=178899001 previd=04
position: 142079124-142079138
CAGCTTCAGGGATCGCATGAATCGACCGTA142079124TTCATTGACAACATTCTGAATCGTGACCAGGAGAAAGGAACACCA
HanXRQChr08 len=153252196 previd=08
position: 138388259-138388273
AATCCATACTTCGACAAATTCGTCATAGTG138388259TTCATTGACAACATTTTGATATACTTACGATCGGCAGACGAGCAT
HanXRQChr09 len=209865144 previd=09
position: 106093983-106093997
AAACCCTATCTAGACAAGTTTGTGATTGTA106093983TTCATTGACAACATTCTGATCTACTCCAAGAGTCAGGAGGAACAC
HanXRQChr13 len=197258317 previd=13
position: 51822025-51822039
AAGCCTTATTTAGACAAGTTCATCATTATT51822025TTCATTGACAACATTCTTATTTATTCGAAGTCTCGAGCCGATCAC
HanXRQChr13 len=197258317 previd=13
position: 99772449-99772463
CTTAGTTGCTACTATGGCTGGTTTCAATTT99772449TTCATTGACAACATTGAGGATGTAAATCAATCCTATGAAAACATC
HanXRQChr15 len=171247636 previd=15
position: 44759685-44759699
AAGCTGTATCTTGACGATTTTGTTATCGTG44759685TTCATTGACAACATTCTGATCTACTCAAAGAGCAAGGAAGATCAC
HanXRQChr15 len=171247636 previd=15
position: 155201594-155201608
GTCCAGATCTGGCCTTCGTTGTTTATTGCA155201594TTCATTGACAACATTCGTGGGGATGGCAAGCCAATCTCTGCAGGT
HanXRQChr16 len=188620566 previd=16
position: 33858208-33858222
AAACCCTAACTTGACAAGTTCGTCATTGTT33858208TTCATTGACAACATTCTGATCTACTCCAAGAGTCAGGAGGAACAC
HanXRQChr16 len=188620566 previd=16
position: 102086585-102086599
AAACCATACTTGGACAAATTTGTTATCGTC102086585TTCATTGACAACATTTTGATTTATTCAAAGAATCAAGCTGATCAT
HanXRQChr17 len=214723238 previd=17
position: 91677982-91677996
AGCCTTCTCTGCTCTTCATTGTTGATGGAG91677982TTCATTGACAACATTCTTGGGGATGGCAACCCGAGTTCTGCAGGT
HanXRQChr00c0137 len=38603 previd=HaXRQ-20151104-s08515
position: 3333-3347
ACCTACAGAAATCGGGTTGCCATCCCCAAG3333AATGTTGTCAATGAACGCTATCAACAATGAAGAACAGAGAAGGCT
HanXRQChr02 len=180951721 previd=02
position: 95999305-95999319
TCCAATAGATAGATACAAATGTTGCCAACG95999305AATGTTGTCAATGAATTTTTCAAAACTACTAAAGAAGAAAATACT
HanXRQChr02 len=180951721 previd=02
position: 96069821-96069835
GAGCTCCCATAGGTACGAATGTTGCCAACG96069821AATGTTGTCAATGAATTTTTCAAAACTACTAAGGAAGAAAAAACT
HanXRQChr02 len=180951721 previd=02
position: 96073750-96073764
GAGCTCACATAGATACCATTGTTGCCAACG96073750AATGTTGTCAATGAATGTTGTACGATTGTTGCCAACAAATGTTGT
HanXRQChr02 len=180951721 previd=02
position: 96073787-96073801
TCAATGAATGTTGTACGATTGTTGCCAACA96073787AATGTTGTCAATGAATGTTATCAACGAATGTTGTGAACAAATTTT
HanXRQChr03 len=168485022 previd=03
position: 69041132-69041146
TATGTATAATATGTATAATTAGTTGGTAGG69041132AATGTTGTCAATGAACCTCCTGTGGTTTCGGCAGCTTCTTTACAA
HanXRQChr03 len=168485022 previd=03
position: 161940060-161940074
TGGTGTTCCTTTCTCCTGGTCACGATTCAG161940060AATGTTGTCAATGAATACGGTCGATTCATGCGATCCCTGAAGGTG
HanXRQChr05 len=219053782 previd=05
position: 93665865-93665879
GTGCTCGTTTGCCGATCATGAGTATATCAA93665865AATGTTGTCAATGAACACTATGACGAATTTGTCGAGATACGGCTT
HanXRQChr07 len=103871911 previd=07
position: 10399784-10399798
ATGCTCGTCCTTCGTCTTTGAGTAGATCAG10399784AATGTTGTCAATGAACACAATTACGAACTTATCGAGGTACGGCTT
HanXRQChr07 len=103871911 previd=07
position: 14785235-14785249
ATGCTCAGCTGCTGATCGTGAGTATATCAA14785235AATGTTGTCAATGAACACTATGACGAATTTGTCGAGATACGGCTT
HanXRQChr08 len=153252196 previd=08
position: 20947999-20948013
GTGTTCTTCCTGACTCTTGGAGTAGATCAG20947999AATGTTGTCAATGAAGACAATGACGAACTTGTCAAGATAGGGTTT
HanXRQChr11 len=168460249 previd=11
position: 163685155-163685169
TGGTGTTCCTTTCTCCTGGTCACGGTTCAG163685155AATGTTGTCAATGAAGGCGGGTAAGTTGAGAAAGTTAAAATAAAA
HanXRQChr12 len=166489593 previd=12
position: 155548379-155548393
GTGGTCAGCTTGATTCTTTGAATAAATCAG155548379AATGTTGTCAATGAAGACGATAACAAATTTGTCCAAGTATAGCTT
HanXRQChr13 len=197258317 previd=13
position: 48228554-48228568
TGCTCGTCGGCCGATCGTGAGTATATTAAT48228554AATGTTGTCAATGAACACTATGACGAATTTGTCAAGATATGGTCG
HanXRQChr13 len=197258317 previd=13
position: 48638599-48638613
TGCTCGTCGGCCGATCGTGAGTATATTAAT48638599AATGTTGTCAATGAACACTATGACGAATTTGTCAAGATATGGTCG
HanXRQChr13 len=197258317 previd=13
position: 140836356-140836370
GTGTTCAGCTTGATTCTTCGAATAAATCAG140836356AATGTTGTCAATGAAGACGATAACAAATTTGTCCAAGTATGGTTT
HanXRQChr13 len=197258317 previd=13
position: 157033515-157033529
ATGATCAGCTTGGTTCTTTGAATAGATCAG157033515AATGTTGTCAATGAAGATGATGACAAATTTGTCCAAGTATGGTTT
HanXRQChr14 len=174509413 previd=14
position: 411387-411401
GTGATCAGCTTTACTCTTGGAATAAATGAG411387AATGTTGTCAATGAAGACTATGACGAATTTATCCAAGTAAGGTTT
HanXRQChr14 len=174509413 previd=14
position: 102522753-102522767
GTGATCAGCTTTACTCTTGGAATAAATAAG102522753AATGTTGTCAATGAAGACGATGACGAATTTATCCAAGTAAGGTTT
HanXRQChr15 len=171247636 previd=15
position: 22311344-22311358
GCTTTCCAACTGGAAATGTGTATTATCCAT22311344AATGTTGTCAATGAACCTCTTTACCGGACCTCTCCCACCACTCAA
HanXRQChr16 len=188620566 previd=16
position: 15803002-15803016
TGGTGTTCCTTTCTCCTGGTATCGATTCAG15803002AATGTTGTCAATGAATACGGTCGATTCTTGCGATCCCTGAAGCTG
HanXRQChr16 len=188620566 previd=16
position: 48678279-48678293
ACCTGCAGTGATTGGCTTGCCATCCCCAAG48678279AATGTTGTCAATGAATGCCATAAACAACGAAGGACAACGAAGGCT
HanXRQChr16 len=188620566 previd=16
position: 66048441-66048455
AATATTGATAGTTTTGAGAATTCGGTTTTC66048441AATGTTGTCAATGAAGAAGGTTTTCAATTGGTGGATCAATGAATG
HanXRQChr17 len=214723238 previd=17
position: 138242008-138242022
TGCTCGTCGGCCGATCGTGAGTATATTAAC138242008AATGTTGTCAATGAACACTATGACGAATTTGTCAAGATACGGCTG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : http://gggenome.dbcls.jp/HanXRQr1.0/TTCATTGACAACATT
lang : en | db : HanXRQr1.0 | k : 0 | strand : | nogap : | query_string : TTCATTGACAACATT | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.081 | 0.073 | search_plus_done; http://172.18.8.72:28216/match?q=TTCATTGACAACATT&k=0&no_gap=0&offset=0&limit=50
0.095 | 0.013 | search_minus_done; http://172.18.8.72:28216/match?q=AATGTTGTCAATGAA&k=0&no_gap=0&offset=0&limit=36
0.110 | 0.015 | cgi_end;

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