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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2024-04-20 22:45:48, GGGenome : Triticum aestivum genome, IWGSC1.0+popseq (Nov, 2014)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

1B dna:chromosome chromosome:IWGSC1.0+popseq:1B:1:295113561:1
position: 62262314-62262328
AAAGTAGCCCGCCGGTCTGCTCTGTACCAG62262314TTCATTGACAACATTCTATACAGAAAAAGACAAAATGGAGTGAAA
1B dna:chromosome chromosome:IWGSC1.0+popseq:1B:1:295113561:1
position: 78145771-78145785
AACGTAGTCCATTGGTCTGCCATGTATCAG78145771TTCATTGACAACATTCTGTACAGAAAAAGACCAAATGGTGTGAAA
2B dna:chromosome chromosome:IWGSC1.0+popseq:2B:1:345274828:1
position: 48590397-48590411
AAAATAGCTCGTCGGTCTGCCATGTATCAG48590397TTCATTGACAACATTCTGTACAAAAAAAGACCGAACAGAGTGAAA
3A dna:chromosome chromosome:IWGSC1.0+popseq:3A:1:185052605:1
position: 167612853-167612867
CCGTGTACAGTCGTCTTCCGATGGATGTCG167612853TTCATTGACAACATTGACCACGCCGTGCCGATAGCACTAAGGCGG
3D dna:chromosome chromosome:IWGSC1.0+popseq:3D:1:124322642:1
position: 35993659-35993673
GAAACATGGTCATCATATGTTACGACATTT35993659TTCATTGACAACATTGACATGTGAGTTCATTTTTAAGTTAATGGA
4B dna:chromosome chromosome:IWGSC1.0+popseq:4B:1:317344599:1
position: 99558369-99558383
GAAATGATCACCCATTTTATTATAAAACTT99558369TTCATTGACAACATTCATAACTAAAAAGCGTCTCTTCACTGATGT
4B dna:chromosome chromosome:IWGSC1.0+popseq:4B:1:317344599:1
position: 185678408-185678422
CCATGTACAGTCCACTTCCGATGGATGTCG185678408TTCATTGACAACATTTACCAGGCCGCGCCGAGAGCACCAGGGCGG
6B dna:chromosome chromosome:IWGSC1.0+popseq:6B:1:204046169:1
position: 123316074-123316088
GAACCCTTTACTTTGAAGCTCACATAATCT123316074TTCATTGACAACATTTAGTATGCAAAATAAGCATAATCCGAGTGT
7B dna:chromosome chromosome:IWGSC1.0+popseq:7B:1:251517909:1
position: 55901801-55901815
CCGTGTATAGTCGTCTTCCGATGGCTGTCG55901801TTCATTGACAACATTGAACATGCTGCGCCGAGAGCACCAAGGCGG
7B dna:chromosome chromosome:IWGSC1.0+popseq:7B:1:251517909:1
position: 218641485-218641499
TGATTGTTTTCAGGTTTATGTATGTATTGT218641485TTCATTGACAACATTCCTCAAATATCAGGTAGTGCACATCACTAA
7B dna:chromosome chromosome:IWGSC1.0+popseq:7B:1:251517909:1
position: 224369042-224369056
TGATTGTTTTCAGGTTTATGTATGTATTGT224369042TTCATTGACAACATTCCTCAAATATCAGGTAGTGCACATCACTAA
7B dna:chromosome chromosome:IWGSC1.0+popseq:7B:1:251517909:1
position: 224505196-224505210
TGATTGTTTTCAGGTTTATGTATGTATTGT224505196TTCATTGACAACATTCCTCAAATATCAGGTGGTGCACATCACTAA
7B dna:chromosome chromosome:IWGSC1.0+popseq:7B:1:251517909:1
position: 228704050-228704064
TGATTGTTTTCAGGTTTATGTATGTATTGT228704050TTCATTGACAACATTCCTCAAATATCAGGTNNNNNNNNNNNNNNN
IWGSC_CSS_4BS_scaff_4949866 dna:scaffold scaffold:IWGSC1.0+popseq:IWGSC_CSS_4BS_scaff_4949866:1:4958:1
position: 3644-3658
AGAGTAGCCCGCCAGTCTACTCTATACCAG3644TTCATTGACAACATTCTGTACAGAAAAAGACCAAATGGAGTGAAA
IWGSC_CSS_4DS_scaff_2326084 dna:scaffold scaffold:IWGSC1.0+popseq:IWGSC_CSS_4DS_scaff_2326084:1:6000:1
position: 2984-2998
ATGAAATTCATGGACAAATTTGTTGTGGTA2984TTCATTGACAACATTCTGGTATATTCAAGAACACCAGAAGAGCAT
IWGSC_CSS_4BL_scaff_6990415 dna:scaffold scaffold:IWGSC1.0+popseq:IWGSC_CSS_4BL_scaff_6990415:1:6416:1
position: 4077-4091
CCACGTACAGTCCACGTCCGATGGATGTCA4077TTCATTGACAACATTGACCAGGCTGCACCGAGAGCACCATGGCGG
IWGSC_CSS_3AL_scaff_4252998 dna:scaffold scaffold:IWGSC1.0+popseq:IWGSC_CSS_3AL_scaff_4252998:1:6641:1
position: 4748-4762
GAAACATGGTCATCATATGTTACGACATTT4748TTCATTGACAACATTGACATGTGAGTTCATTTTGAAGTTAATGGA
IWGSC_CSS_6BS_scaff_3042279 dna:scaffold scaffold:IWGSC1.0+popseq:IWGSC_CSS_6BS_scaff_3042279:1:7282:1
position: 1717-1731
AACCCCTTTAGTTTGAACTTAACACAATCT1717TTCATTGACAACATTCAGTATGTAAAATAAGTATAATCCGAATGT
IWGSC_CSS_5AL_scaff_2770101 dna:scaffold scaffold:IWGSC1.0+popseq:IWGSC_CSS_5AL_scaff_2770101:1:7667:1
position: 4103-4117
ATGAAATTTATGGACAAATTTGTTGTGGTG4103TTCATTGACAACATTCTGGTATACTCTAAGACACCAGAAGAGCAT
IWGSC_CSS_5BL_scaff_10920589 dna:scaffold scaffold:IWGSC1.0+popseq:IWGSC_CSS_5BL_scaff_10920589:1:11466:1
position: 5655-5669
GGCAACCACCCGTGTCGCGGTCTCACTCTC5655TTCATTGACAACATTTGCCACCCGATGACGCTCTAATTTGTCAAG
IWGSC_CSS_2BL_scaff_8046232 dna:scaffold scaffold:IWGSC1.0+popseq:IWGSC_CSS_2BL_scaff_8046232:1:13081:1
position: 4225-4239
AAAGTGGCCCGCCGATCTACCCTGTATCAA4225TTCATTGACAACATTCTGTACAGAAAAAGGCTAAACAATGTCAAG
IWGSC_CSS_4BS_scaff_4944788 dna:scaffold scaffold:IWGSC1.0+popseq:IWGSC_CSS_4BS_scaff_4944788:1:18689:1
position: 1109-1123
GAAATGATCACCCATTTTATTATACTACTT1109TTCATTGACAACATTCATAACTAAAAAGCGTCTCTTCACTGATGT
IWGSC_CSS_4AL_scaff_7168062 dna:scaffold scaffold:IWGSC1.0+popseq:IWGSC_CSS_4AL_scaff_7168062:1:19637:1
position: 7965-7979
CCTTAAAAGCAAACACTTATTTGCCTTCTT7965TTCATTGACAACATTTAGATGGCCTTTAGTAGTCTTTATCTACTT
2B dna:chromosome chromosome:IWGSC1.0+popseq:2B:1:345274828:1
position: 56016688-56016702
TTGTGAATGGATAATTTGCTTTTCTTAAGA56016688AATGTTGTCAATGAATTTTAAGTGATAATATTTATATAGATCATA
2B dna:chromosome chromosome:IWGSC1.0+popseq:2B:1:345274828:1
position: 230247914-230247928
CATTTAGATGCATAACCATCGGTTGTTGTG230247914AATGTTGTCAATGAATTGCCAGACCGGGTTTAACTGTGCGCTCTG
2B dna:chromosome chromosome:IWGSC1.0+popseq:2B:1:345274828:1
position: 253056699-253056713
TATTCATCTTCAGCTGCAACTGTTGTTGCG253056699AATGTTGTCAATGAAGAAGACGACGCCACTTCACCGACCATGGCT
2B dna:chromosome chromosome:IWGSC1.0+popseq:2B:1:345274828:1
position: 256246461-256246475
CTTGACATTGTTTAGCCTTTTTCTGTACAG256246461AATGTTGTCAATGAATTGATACAGGGTAGATCGGCGGGCCACTTT
2D dna:chromosome chromosome:IWGSC1.0+popseq:2D:1:150381694:1
position: 108419545-108419559
TAGTACAAAATACTCAGCCTTTCTGCGGCA108419545AATGTTGTCAATGAATAAACGAAGAGAATAGACAAGATTCCAGAC
3B dna:chromosome chromosome:IWGSC1.0+popseq:3B:1:774434471:1
position: 307706493-307706507
TCCATTAACTTAAAAATGAACTCACATGTC307706493AATGTTGTCAATGAAAAATGCCGTAACATATGATGACCATGTTTC
3B dna:chromosome chromosome:IWGSC1.0+popseq:3B:1:774434471:1
position: 558301471-558301485
TTTCACTCCATTTGGTCTTCTTCTATACAG558301471AATGTTGTCAATGAACTGGTACAGGGCAGACCGGCGGGCTACTTT
4B dna:chromosome chromosome:IWGSC1.0+popseq:4B:1:317344599:1
position: 33010283-33010297
ACATCAGTGAAGAGACGCTTTTTAGTTATG33010283AATGTTGTCAATGAAAAGTAGTATAATAAAATGGGTGATCATTTC
4B dna:chromosome chromosome:IWGSC1.0+popseq:4B:1:317344599:1
position: 91314909-91314923
CCACCTGGGTGTTGTCGGAGTGGTGTGGTC91314909AATGTTGTCAATGAACGACAGCCATCGAAAGATTATTGTACGCGG
4B dna:chromosome chromosome:IWGSC1.0+popseq:4B:1:317344599:1
position: 144314856-144314870
TCTCACTCCGTTTGGCCTTTTTCTGTATAG144314856AATGTTGTCAATGAACTGGTACAGGGCAGACCGTCGGGCTACTTT
4B dna:chromosome chromosome:IWGSC1.0+popseq:4B:1:317344599:1
position: 174431325-174431339
ATTTCACCCATTTGGTCTCTTTCTGTACAA174431325AATGTTGTCAATGAATTGGTACAGAGTGGACCGGTGGGCTACTTT
4B dna:chromosome chromosome:IWGSC1.0+popseq:4B:1:317344599:1
position: 208814727-208814741
TTTCACACCATTCGTTCTTTTTCTGTACAG208814727AATGTTGTCAATGAACTGGTACATGGCGGACCGACGAGATACTTT
5B dna:chromosome chromosome:IWGSC1.0+popseq:5B:1:273623383:1
position: 212079719-212079733
TTTCACCCCATTCGGTCTCCTTCTGTACAA212079719AATGTTGTCAATGAATTGATACAAAGCAGACCAGCGGGCTACTTT
5D dna:chromosome chromosome:IWGSC1.0+popseq:5D:1:161539237:1
position: 7594760-7594774
CCGCCTTGGTGCACTCGACGCGGCGTGGTC7594760AATGTTGTCAATGAACGACTTCCATCGGAAGAGTACTGTACGTGG
6A dna:chromosome chromosome:IWGSC1.0+popseq:6A:1:207910053:1
position: 18278916-18278930
CGAAGAAGTTTGTGTTGGAGGGAAGGCAAG18278916AATGTTGTCAATGAAAACACAAATCATTGATGGGCAAGGATGGTA
6A dna:chromosome chromosome:IWGSC1.0+popseq:6A:1:207910053:1
position: 24912132-24912146
CTTGCACTCTTTCTGATGTTTGCCATGCCT24912132AATGTTGTCAATGAAATAACATGTGCTCTGGCCACCATTATATAG
6A dna:chromosome chromosome:IWGSC1.0+popseq:6A:1:207910053:1
position: 55635813-55635827
ACACTCGGATTATGCCTATTTTGCATACTA55635813AATGTTGTCAATGAAAGATTATGTGAGCTTCAAAGTAAAGGGGTT
6B dna:chromosome chromosome:IWGSC1.0+popseq:6B:1:204046169:1
position: 191808865-191808879
CATAGACACTGGCATGCCATGCAATTTGAA191808865AATGTTGTCAATGAATTCTTGTAGAACTGTGGTGACAGAGAAGGG
7B dna:chromosome chromosome:IWGSC1.0+popseq:7B:1:251517909:1
position: 237998487-237998501
CAAGGCTCGGTTGCATATGTGGTCCACCTG237998487AATGTTGTCAATGAAATGGGGGCGCAAAAGTAAGCCATACCAGTA
IWGSC_CSS_2BL_scaff_8065601 dna:scaffold scaffold:IWGSC1.0+popseq:IWGSC_CSS_2BL_scaff_8065601:1:4733:1
position: 1118-1132
TATCACTCTGTTTGGTCTTTTTCTGTATAG1118AATGTTGTCAATGAACTGGTGCAGGGCAGACCGACGAGCTACTTT
IWGSC_CSS_7DL_scaff_3336905 dna:scaffold scaffold:IWGSC1.0+popseq:IWGSC_CSS_7DL_scaff_3336905:1:4788:1
position: 2639-2653
TATCATTGTTCAAACCGACTCATCGGAAGC2639AATGTTGTCAATGAAGGGGGACAGTCTTTGGTTTTCTGCTTATGG
IWGSC_CSS_1BS_scaff_3426785 dna:scaffold scaffold:IWGSC1.0+popseq:IWGSC_CSS_1BS_scaff_3426785:1:5585:1
position: 3154-3168
TTTCACACCGTTTGGTCTTTTTATGTATAG3154AATGTTGTCAATGAACTGGTACATGGCAGACCGATGGGCTACTTT
IWGSC_CSS_7DS_scaff_3968713 dna:scaffold scaffold:IWGSC1.0+popseq:IWGSC_CSS_7DS_scaff_3968713:1:8540:1
position: 2228-2242
AACATCCGTGAAGAGACGCTTTCAGTTTTG2228AATGTTGTCAATGAAAAGATGTATAATAAAATGGGTGATCAGTTC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : http://gggenome.dbcls.jp/IWGSC1.0/TTCATTGACAACATT
lang : en | db : IWGSC1.0 | k : 0 | strand : | nogap : | query_string : TTCATTGACAACATT | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.086 | 0.077 | search_plus_done; http://172.18.8.75:28202/match?q=TTCATTGACAACATT&k=0&no_gap=0&offset=0&limit=50
0.106 | 0.020 | search_minus_done; http://172.18.8.75:28202/match?q=AATGTTGTCAATGAA&k=0&no_gap=0&offset=0&limit=27
0.120 | 0.015 | cgi_end;

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