GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2024-05-09 01:54:19, GGGenome : Mouse genome, JF1v2

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

chr1
position: 32446145-32446159
TTTTTAAAGACAGCAGGAAATAGCAAATAA32446145AATGTTGTCAATGAACAGTGTTTCCAAATGGTACATTAAGTATTC
chr2
position: 47195230-47195244
ATATCTATTTATTCATTGATGTAGCTTTCA47195230AATGTTGTCAATGAACACTGTTACTTCGTTGAGCACATGAAAAGT
chr3
position: 39223893-39223907
GTTGCCCCAGATTCAAGCTGCATGTTGACC39223893AATGTTGTCAATGAACTTCAACTACAAGTTCTGAGGCAGAATCTA
chr3
position: 42586816-42586830
TTAAACATCAGAGAAATGAAAAATAAGTAA42586816AATGTTGTCAATGAATAAACATCCCTGTAAGTTAAGGTTTGCAAT
chr2
position: 131323954-131323968
AGACAAATTAAGACTGTATTGTATCATGGT131323954TTCATTGACAACATTTAAAATTGTTACATATTTCAAAATTTTTTA
chr6
position: 141389982-141389996
AAAGTACTATCAGTTTCCTAAATATATCCA141389982TTCATTGACAACATTGTTCACTCTTCCATAAACATCTGCTGGTTA
chr6
position: 146144134-146144148
TGAACACATTCTCCCTGTTTGTGTCATCAC146144134TTCATTGACAACATTTAACTGGGCCTTCTGTGTGGATACCATGAT
chr10
position: 46788298-46788312
TATTTCTTTCTGTTTGTTTATATGATGGAC46788298TTCATTGACAACATTTCATATATGTAACCATCCTGTATCTCTGTA
chr14
position: 109654332-109654346
TGCTGCTGGAATCTCTCCCTGGAGGGTGTG109654332TTCATTGACAACATTGCCCAMTGAGAGTGACAACCTCAGCAGCCA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : http://gggenome.dbcls.jp/JF1v2/AATGTTGTCAATGAA
lang : en | db : JF1v2 | k : 0 | strand : | nogap : | query_string : AATGTTGTCAATGAA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.079 | 0.071 | search_plus_done; http://172.18.8.72:28266/match?q=AATGTTGTCAATGAA&k=0&no_gap=0&offset=0&limit=50
0.086 | 0.006 | search_minus_done; http://172.18.8.72:28266/match?q=TTCATTGACAACATT&k=0&no_gap=0&offset=0&limit=46
0.089 | 0.003 | cgi_end;

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