GGGenome Help | Japanese

Database:

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2020-12-01 11:52:51, GGGenome : Human Japanese Reference Genome, JRGv1 (Aug, 2016)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

chr1
position: 83043644-83043658
CTAATTAATGAATAGTAAGTATATTTTCTC83043644TTCATTGACAACATTTTTCCTCTTACTTTATTGTAAGAATACAAT
chr2
position: 160418609-160418623
ATTGCAGCAAAGAAGCACATTTATATTCTA160418609TTCATTGACAACATTAGCATATAATGCAAATTTACTTTGGAACTT
chr3
position: 15250441-15250455
ATTGTAATAGCCAGAAATTGGAAACATATA15250441TTCATTGACAACATTTAAGATTATAATATAGTCATATAATAGTCC
chr3
position: 84603106-84603120
TTGGTTTTGTATATATTAAATAGTTGAAAC84603106TTCATTGACAACATTAAGTTTGTTTTCTAGGCTCTATTGGGATAA
chr4
position: 16138549-16138563
AACGAAAGGCGTTTGAGGAAAGCCTGATAA16138549TTCATTGACAACATTACCATCAACCACACCTTACCATTCCTAGGA
chr4
position: 62178846-62178860
TCTTCAAATATTTTACAGAGTTCAACTCTT62178846TTCATTGACAACATTATGACATTATGCTGATTGGATCCAGTGAGT
chr4
position: 148949496-148949510
CAGAATATATTATCGCTTTAAACACAGATT148949496TTCATTGACAACATTTTGTGGGCACCCATTTAATATTAATATTAA
chr4
position: 165839332-165839346
AAAAACGTCTGATTTTGTGTAACACTCCTT165839332TTCATTGACAACATTAAACAGCAATTAACTATTTGCTGATTACAT
chr6
position: 62017869-62017883
CTATTTCAATCAACCATCTTGTAATCATAC62017869TTCATTGACAACATTTTACTCATACTATAATAAGTTGCTATTTCT
chr7
position: 3524325-3524339
GTGGTGCCTGGCCTGAGTCAGCTCATTAGC3524325TTCATTGACAACATTGGTTCGTTCAACAAATATTGCCTGAGAAGA
chr8
position: 31511136-31511150
GTATTTTTAAATTCATCGATATTTCCACTT31511136TTCATTGACAACATTATTAAGTTTTATTGTGTCTCTTTTTTCAAA
chr11
position: 24495106-24495120
TTGAGTTTCCTGGAACATAGATATGTCTTG24495106TTCATTGACAACATTCTAGCATTGAGGACAGTGAATAGAGAAAAG
chr13
position: 84200626-84200640
GCAGTCTGGAGGTTCTCCCTGGAGGCTGTA84200626TTCATTGACAACATTTCCTGAGGTAACTCACACTGAGGTGACAAC
chr18
position: 29580945-29580959
ATATTTATATATGTATATATTTCATATTAT29580945TTCATTGACAACATTTACTTGGGAGATTTGTCTCAACAAAAATTA
chr19
position: 41106289-41106303
AAGCCACCACACCCGGCCTATCTTAGCTTT41106289TTCATTGACAACATTAGTATAATGTTAACAGCTCTCCTAAGGGAG
chr2
position: 196276180-196276194
AATGCCCCACATTTCATTAAGGGTGATGAC196276180AATGTTGTCAATGAAGAAGTTGCTTCTCATATAACTATACTGTCA
chr3
position: 57221479-57221493
GCCTGTTTTTCATATGCATATGTAATAGGG57221479AATGTTGTCAATGAAAACACAATAGTATTTGGAGTGCAGCATAGT
chr3
position: 97416280-97416294
AATTTGAATATTAATTTTAAAATTTATTCA97416280AATGTTGTCAATGAACATTGTCAGACATTTTGCAGCATTTCTTTA
chr5
position: 9768064-9768078
GAGGGCCTTTCCAGCTCCAAAGTCGATGGC9768064AATGTTGTCAATGAAAGATCAACAGATCAGTGCATTATACCCAGG
chr7
position: 34131774-34131788
TCTACAGATTTTGGATTTACCAGCCCCCAC34131774AATGTTGTCAATGAATTCCTTAAAATCTCTCTCTCTCTCTCTCTC
chr7
position: 78748636-78748650
AACTAACACCCATAAAAGGTATGACTCTTT78748636AATGTTGTCAATGAAGATTTAACATAATATTCTATAACAAATATA
chr12
position: 79152360-79152374
ATAAGATAGGTTTGTTCCAGAAGTTTAAAA79152360AATGTTGTCAATGAATTTGATAAAGTTTAATATTCACATTAAAAG
chr19
position: 40937215-40937229
CTCCCTTAGGAGAGCTGTTAACATTATACT40937215AATGTTGTCAATGAAAAAGCTAAGATAGGCCAGGCATGGTGGCTC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : http://gggenome.dbcls.jp/JRGv1/TTCATTGACAACATT
lang : en | db : JRGv1 | k : 0 | strand : | nogap : | query_string : TTCATTGACAACATT | format : html | download : | debug :

0.007 | 0.007 | search_start;
0.091 | 0.084 | search_plus_done; http://172.18.8.72:28261/match?q=TTCATTGACAACATT&k=0&no_gap=0&offset=0&limit=50
0.107 | 0.017 | search_minus_done; http://172.18.8.72:28261/match?q=AATGTTGTCAATGAA&k=0&no_gap=0&offset=0&limit=35
0.111 | 0.004 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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