GGGenome Help | Japanese

Database:

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2023-02-08 10:03:25, GGGenome : Ciona intestinalis genome, KH (Jul, 2008)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

KhC3
position: 2582474-2582488
ATAAATTAGAACTTATAAAAGTTATTAATA2582474AATGTTGTCAATGAACCACCTATGTTAAACACAAACCTAAAACGT
KhL61
position: 35053-35067
GGGCATGATGAGATGACACCGCATCACATT35053AATGTTGTCAATGAAAAACGCAAGTATAGAAAGTGGAATAGTGCT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : http://gggenome.dbcls.jp/KH/AATGTTGTCAATGAA
lang : en | db : KH | k : 0 | strand : | nogap : | query_string : AATGTTGTCAATGAA | format : html | download : | debug :

0.008 | 0.008 | search_start;
0.079 | 0.071 | search_plus_done; http://172.18.8.77:28231/match?q=AATGTTGTCAATGAA&k=0&no_gap=0&offset=0&limit=50
0.084 | 0.005 | search_minus_done; http://172.18.8.77:28231/match?q=TTCATTGACAACATT&k=0&no_gap=0&offset=0&limit=48
0.084 | 0.000 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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