GGGenome | Results

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2025-04-03 22:14:03, GGGenome : Mouse genome, MSMv3

Summary:

Results:

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

chr2
position: 131291594-131291608

AGACAAATTAAGACTGTATTGTATCATGGT131291594TTCATTGACAACATTTAAAATTGTTACATATTTCAAAATTTTTTA

chr6
position: 141355378-141355392

AAAGTACTATCAGTTTCCTAAATATATCCA141355378TTCATTGACAACATTGTTCACTCTTCCATAAACATCTGCTAGTTA

chr6
position: 146108625-146108639

TGAACACATTCTCCCTGTTTGTGTCATCAC146108625TTCATTGACAACATTTAACTGGGCCTTCTGTGTGGATACCATGAT

chr10
position: 46777408-46777422

TATTTCTTTCTGTTTGTTTATATGATGGAC46777408TTCATTGACAACATTTCATATATGTAACCATCCTGTATCTCTGTA

chr14
position: 109630942-109630956

TGCTGCTGGAATCTCTCCCTGGAGGGTGTG109630942TTCATTGACAACATTGCCCACTGAGAGTGACAACCTCAGCAGCCA

chr1
position: 32438447-32438461

TTTTTAAAGACAGCAGGAAATAGCAAATAA32438447AATGTTGTCAATGAACAGTGTTTCCAAATGGTACATTAAGTATTC

chr2
position: 47183896-47183910

ATATCTATTTATTCATTGATGTAGCTTTCA47183896AATGTTGTCAATGAACACTGTTACTTCGTTGAGCACATGAAAAGT

chr3
position: 39215355-39215369

GTTGCCCCAGATTCAAGCTGCATGTTGACC39215355AATGTTGTCAATGAACTTCAACTACAAGTTCTGAGGCAGAATCTA

chr3
position: 42577417-42577431

TTAAACATCAGAGAAATGAAAAATAAGTAA42577417AATGTTGTCAATGAATAAACATCCCTGTAAGTTAAGGTTTGCAAT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Tab-delimited text: Open in new window | Download
You can copy-paste the result into spreadsheet softwares (e.g. Excel) or text editors.
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You can open CSV files using spreadsheet softwares (e.g. Excel) or text editors.
BED format: Link | Download
GFF format: Link | Download
JSON format: Link | Download

Debug Info:

0.009 | 0.009 | search_start;
0.083 | 0.075 | search_plus_done; http://172.18.8.72:28265/match?q=TTCATTGACAACATT&k=0&no_gap=0&offset=0&limit=50
0.090 | 0.007 | search_minus_done; http://172.18.8.72:28265/match?q=AATGTTGTCAATGAA&k=0&no_gap=0&offset=0&limit=45
0.093 | 0.003 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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