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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2024-04-25 05:37:33, GGGenome : Crab-eating macaque genome, MacFas5.0 (Jun, 2013)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

2 dna:chromosome chromosome:MacFas_5.0:2:1:192460366:1 REF
position: 112525772-112525786
GCCTGTTTTTCATATGCATATGTAATAGGG112525772AATGTTGTCAATGAAAACACAATAGTATTTGGAGTGCAGCATAGT
6 dna:chromosome chromosome:MacFas_5.0:6:1:181584905:1 REF
position: 9837729-9837743
GAGGGCCTTTCCAGCTCCAAGGTCAATGGC9837729AATGTTGTCAATGAAAGATCAGCAGGTCAGTGCCTTATACCCAGA
11 dna:chromosome chromosome:MacFas_5.0:11:1:137757926:1 REF
position: 78340619-78340633
GTAAGATAGGTTTGTTCCAGAAGTTTAAAA78340619AATGTTGTCAATGAATTTGATAAAATTTAATATTCACATTAGAAG
14 dna:chromosome chromosome:MacFas_5.0:14:1:130733371:1 REF
position: 43025544-43025558
GTTTGCTCTATTCACTGTCCTCAACGCTAG43025544AATGTTGTCAATGAACAAGACATATCTATGTTCCTGGAAACTCAA
19 dna:chromosome chromosome:MacFas_5.0:19:1:59248254:1 REF
position: 41387425-41387439
ACTCCCTTAGGAGAGCTGTAACATTATACT41387425AATGTTGTCAATGAAAAGCTAAGACAGGCCAGGGGTGGTGGCTCA
19 dna:chromosome chromosome:MacFas_5.0:19:1:59248254:1 REF
position: 41444775-41444789
CTCCCTTAGGAGAGCCGTTAACATTATACT41444775AATGTTGTCAATGAAAAAGCTAAGATAGGCAGGGCGTGGTGGCTC
5 dna:chromosome chromosome:MacFas_5.0:5:1:189454096:1 REF
position: 148104515-148104529
CAGAATATATTATCGCTTTGAACACAGATT148104515TTCATTGACAACATTTTGTGGGCATCCATTTAATATTAATATTAA
5 dna:chromosome chromosome:MacFas_5.0:5:1:189454096:1 REF
position: 165086432-165086446
TAAAACCTCTGATTTTGTGTAACACTCCTT165086432TTCATTGACAACATTAAACAGCAATTAACTATTTGCTGACTACAT
5 dna:chromosome chromosome:MacFas_5.0:5:1:189454096:1 REF
position: 180823962-180823976
TTTGGACCCCCAGATCAGTCTTCATATTCT180823962TTCATTGACAACATTCATGAAGTTCTGCAGAAATTAGATAGAATT
5 dna:chromosome chromosome:MacFas_5.0:5:1:189454096:1 REF
position: 185708646-185708660
GCCTGAGCCACCATGCCCAGCTTGCTATTC185708646TTCATTGACAACATTCACTTAAACAAACATCCATAAAATTAAGTC
16 dna:chromosome chromosome:MacFas_5.0:16:1:80997621:1 REF
position: 14308050-14308064
GCCTCTGGGCCTATATTAGATGGGCCATGC14308050TTCATTGACAACATTGATTTTATGTTTATTTGTGAAAGGGCAGAA
17 dna:chromosome chromosome:MacFas_5.0:17:1:96864807:1 REF
position: 49623721-49623735
TGTTCAAAGTTTTCCCCTCCAATGTATCTT49623721TTCATTGACAACATTCGGATTTATCACATCAATCAGTCAATAAAT
17 dna:chromosome chromosome:MacFas_5.0:17:1:96864807:1 REF
position: 66800600-66800614
GCAGTCTGGAGGTTCTCCCTGGAGGCTGTA66800600TTCATTGACAACATTGCCTGAGGTAACTCACACTGAGGTGACAAC
19 dna:chromosome chromosome:MacFas_5.0:19:1:59248254:1 REF
position: 41605405-41605419
GTGAGCCACCATGCTGGCCTATCTTAGCTT41605405TTCATTGACAACATTAGTATAATGTTAACAGCTCTCCTAAGGGAA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : http://gggenome.dbcls.jp/ja/MacFas5.0/AATGTTGTCAATGAA
lang : ja | db : MacFas5.0 | k : 0 | strand : | nogap : | query_string : AATGTTGTCAATGAA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.082 | 0.074 | search_plus_done; http://172.18.8.76:28122/match?q=AATGTTGTCAATGAA&k=0&no_gap=0&offset=0&limit=50
0.090 | 0.008 | search_minus_done; http://172.18.8.76:28122/match?q=TTCATTGACAACATT&k=0&no_gap=0&offset=0&limit=44
0.095 | 0.005 | cgi_end;

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