GGGenome Help | Japanese

Database:

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2021-10-19 08:39:34, GGGenome : Malus domestica genome, v1.0

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

MDC006112.286:482-496
AGGATGAAAACCTAATTACTCCTATTTATA482TTCATTGACAACATTGAGTTCAATCCAAATCTATAGTCCTAACAA
MDC011811.97:4486-4500
TTAGTTTATTTCACTCGAATCCAGCATAAG4486TTCATTGACAACATTGTTTGTGAAGCAGCATAATTAGATGGTATC
MDC018764.238:8582-8596
ACCTACACATTGGAGAAATTGGCACAGTTG8582TTCATTGACAACATTGTTAAACTTCATGGTGTACCGGTCACTATT
MDC001332.392:21690-21704
GTGTTGGTCTTTCTCTGCCAATATCTTTTG21690AATGTTGTCAATGAAGCTCATCATCGTCTCTAAACCCTTTTCGTC
MDC006112.449:1053-1067
TTGTTAGGACTATAGATTTGGATTGAACTC1053AATGTTGTCAATGAATATAAATAGGAGTAATTAGGTTTTCATCCT
MDC013338.153:2014-2028
GTAAAATAAAATTTTTTTTTTTTTTTTTTA2014AATGTTGTCAATGAAAGTAGAAAAACATAGAAAAGCAGAAGCAGA
MDC015301.257:2482-2496
GATACCATCTAATTATGCTGCTTCACAAAC2482AATGTTGTCAATGAACTTATGCTGGATTCGAGTGAWATAAACTAA
MDC016291.91:18709-18723
AATATATATATATATATTTTTTTTTTTTTA18709AATGTTGTCAATGAAAGTAGAAAAACATAGAAAAGTAAAAATAGG
MDC018137.204:169-183
TTGTTAGGACTATAGATAWGGATTGAACTC169AATGTTGTCAATGAATATAAATAGGAGTAATTAGGTTTTCATCCT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : http://gggenome.dbcls.jp/Mdomestica_v1.0/TTCATTGACAACATT
lang : en | db : Mdomestica_v1.0 | k : 0 | strand : | nogap : | query_string : TTCATTGACAACATT | format : html | download : | debug :

0.007 | 0.007 | search_start;
0.081 | 0.073 | search_plus_done; http://172.18.8.74:28303/match?q=TTCATTGACAACATT&k=0&no_gap=0&offset=0&limit=50
0.087 | 0.006 | search_minus_done; http://172.18.8.74:28303/match?q=AATGTTGTCAATGAA&k=0&no_gap=0&offset=0&limit=47
0.090 | 0.003 | cgi_end;

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