GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2024-12-27 08:58:47, GGGenome : Medicago truncatula str. A17 genome, MedtrA17_4.0 (Jun, 2014)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

4 dna:chromosome chromosome:GCA_000219495.2:4:1:56582383:1
position: 27812701-27812715
CTTTAACTCCCTTCAAAATATGAATCAAAC27812701TTCATTGACAACATTTATTGTAGCATGTCGAAAATACATGTTTTT
scaffold0070 dna:supercontig supercontig:GCA_000219495.2:scaffold0070:1:66121:1
position: 53123-53137
TGGTGGTAACCAGCTTTCAGGTAAGATTTT53123TTCATTGACAACATTGTCTGTTTATTATACTGGTTTCTCTATAGT
5 dna:chromosome chromosome:GCA_000219495.2:5:1:43630510:1
position: 6083058-6083072
ATTTGAAGGATGGGAGAAAGCAGAAGCTGA6083058AATGTTGTCAATGAAGGAACATCTCGAGGAATCTATACACCAGGA
7 dna:chromosome chromosome:GCA_000219495.2:7:1:49172423:1
position: 18450513-18450527
GTTAGCCTGTATTTTTGATAGGCTATAATA18450513AATGTTGTCAATGAATTTTGACTTAGACTTTGAAAAGAAGTTAAT
8 dna:chromosome chromosome:GCA_000219495.2:8:1:45569985:1
position: 25396405-25396419
ACTATAGAGAAACAAGTATAACAAACAGAC25396405AATGTTGTCAATGAAAATATCTTACCCTCCAAGTTGTTGCCAATA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/MedtrA17_4.0/TTCATTGACAACATT
lang : en | db : MedtrA17_4.0 | k : 0 | strand : | nogap : | query_string : TTCATTGACAACATT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.084 | 0.075 | search_plus_done; http://172.18.8.75:28179/match?q=TTCATTGACAACATT&k=0&no_gap=0&offset=0&limit=50
0.089 | 0.005 | search_minus_done; http://172.18.8.75:28179/match?q=AATGTTGTCAATGAA&k=0&no_gap=0&offset=0&limit=48
0.091 | 0.002 | cgi_end;

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