GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2024-04-19 12:15:49, GGGenome : Oryza brachyantha genome, Oryza_brachyantha.v1.4b (May, 2011)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

4 dna:chromosome chromosome:Oryza_brachyantha.v1.4b:4:1:21479432:1
position: 19667937-19667951
GATCCTGTGGACCCTGCAAAAGATGTCGAG19667937AATGTTGTCAATGAAGGCAATGCTGCATCCAAAGTTCATATAGGT
5 dna:chromosome chromosome:Oryza_brachyantha.v1.4b:5:1:20131956:1
position: 5552582-5552596
TATGATTGAGCACTCCTACCTACTTTGCAA5552582AATGTTGTCAATGAACTGTTTGTTCGTCTACATAAATGTTCAATG
5 dna:chromosome chromosome:Oryza_brachyantha.v1.4b:5:1:20131956:1
position: 18148510-18148524
TCATGACCAAATTACCTGAGTGAAACGGAA18148510AATGTTGTCAATGAACAGAAGCACATCTTGTCCTTCAGCATCACG
1 dna:chromosome chromosome:Oryza_brachyantha.v1.4b:1:1:33916305:1
position: 33490991-33491005
AGATGGAAAAAACCATTAGTATCAGATTAC33490991TTCATTGACAACATTGACATGTTGAAGTACGCTGAAAGATGGCAT
7 dna:chromosome chromosome:Oryza_brachyantha.v1.4b:7:1:18603524:1
position: 14519962-14519976
AGATCTATCTAATTTAGATATAGCGCTCTC14519962TTCATTGACAACATTTTTCACTTCCTGCATTAGATTTCCATTATC
7 dna:chromosome chromosome:Oryza_brachyantha.v1.4b:7:1:18603524:1
position: 18426000-18426014
GCTTGAAGAACTGTGGAAAGAAATGGATTA18426000TTCATTGACAACATTAGCACTTCTCGAGAAAAAGCAGGTATGGTG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : http://gggenome.dbcls.jp/Orybr_v1.4b/AATGTTGTCAATGAA
lang : en | db : Orybr_v1.4b | k : 0 | strand : | nogap : | query_string : AATGTTGTCAATGAA | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.079 | 0.071 | search_plus_done; http://172.18.8.75:28182/match?q=AATGTTGTCAATGAA&k=0&no_gap=0&offset=0&limit=50
0.085 | 0.006 | search_minus_done; http://172.18.8.75:28182/match?q=TTCATTGACAACATT&k=0&no_gap=0&offset=0&limit=47
0.087 | 0.002 | cgi_end;

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