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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2024-11-21 21:07:33, GGGenome : Oryza nivara genome, AWHD00000000 (Aug, 2013)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

3 dna:chromosome chromosome:AWHD00000000:3:1:36134596:1
position: 10246666-10246680
TGATCCCAATAGTTGTTTATTTTTGGACTC10246666TTCATTGACAACATTGCCACTTTGATGACTGTTCTGACATGAATG
6 dna:chromosome chromosome:AWHD00000000:6:1:29411429:1
position: 3359431-3359445
TCCTGATGTCCGACGTGTGGATAAGACCTG3359431TTCATTGACAACATTCTCTTGTTTGTACCGATTCATGGCTTGCTC
7 dna:chromosome chromosome:AWHD00000000:7:1:24717764:1
position: 9221547-9221561
CGTGTGCCTCCTGGATGCACCAATCGGCTG9221547TTCATTGACAACATTTTGTTGAAGGACCTTGGCAACATCTTTTTG
7 dna:chromosome chromosome:AWHD00000000:7:1:24717764:1
position: 18603273-18603287
AGATCTATCTAATTTAGGTGTAGTGCTCTC18603273TTCATTGACAACATTTTTCACTTCCTGCGTTAGGTTTCCATTATC
9 dna:chromosome chromosome:AWHD00000000:9:1:20407407:1
position: 13516691-13516705
CTTTCAAATGATGGTCAAACTAATTATAAA13516691TTCATTGACAACATTAACTAAACGAGTGAAGAGTGAAGAGAAGAT
5 dna:chromosome chromosome:AWHD00000000:5:1:28014461:1
position: 7684826-7684840
TATGATTGAGCACCCCTACCTACTTTGCAA7684826AATGTTGTCAATGAACTGTTTGTTCGCTACATAAATGTTCAATGA
5 dna:chromosome chromosome:AWHD00000000:5:1:28014461:1
position: 25222964-25222978
TCTTGCATAAATTACCTGAGTGAAACGGAA25222964AATGTTGTCAATGAACAAAAGCACATCTTGTCCTTCGGCATCACG
10 dna:chromosome chromosome:AWHD00000000:10:1:21549876:1
position: 3857723-3857737
CCTCCATAAGCAATGCCTCTTTTCCCTATC3857723AATGTTGTCAATGAATGTTTTAGGCAGCTGCAAAGTGCACATGTA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/Oryni/TTCATTGACAACATT
lang : en | db : Oryni | k : 0 | strand : | nogap : | query_string : TTCATTGACAACATT | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.080 | 0.072 | search_plus_done; http://172.18.8.75:28187/match?q=TTCATTGACAACATT&k=0&no_gap=0&offset=0&limit=50
0.087 | 0.007 | search_minus_done; http://172.18.8.75:28187/match?q=AATGTTGTCAATGAA&k=0&no_gap=0&offset=0&limit=45
0.089 | 0.002 | cgi_end;

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