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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2024-11-24 06:11:39, GGGenome : Prunus persica genome, Prupe1_0 (Mar, 2013)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

scaffold_3 dna:supercontig supercontig:GCA_000346465.1:scaffold_3:1:22025550:1
position: 5632810-5632824
TATGTAATCAATAATGCTATTTGTCATATA5632810TTCATTGACAACATTGTTATTTTGTATTATATTTACCGACCACAT
scaffold_3 dna:supercontig supercontig:GCA_000346465.1:scaffold_3:1:22025550:1
position: 14568021-14568035
AGGTTTTGATGCCAAGCCACATGTGAGGCT14568021TTCATTGACAACATTTTCTTGCATTAAAAAATTCTAAGGGTACAA
scaffold_7 dna:supercontig supercontig:GCA_000346465.1:scaffold_7:1:22790193:1
position: 1880982-1880996
GAAGTTTCTCTCTGTTCGGTTTAATTATTT1880982TTCATTGACAACATTGGATCATGGTTAGACTTTCAAGATAAACAG
scaffold_7 dna:supercontig supercontig:GCA_000346465.1:scaffold_7:1:22790193:1
position: 14646814-14646828
AACAAACAATTTTAGTAAGTGAAATCTTAA14646814TTCATTGACAACATTCTACAGGAATTTATTAATCTATCTTTTCAG
scaffold_4 dna:supercontig supercontig:GCA_000346465.1:scaffold_4:1:30528727:1
position: 4305224-4305238
AATATAGTAGATGAAGGTTGAATCTGGATT4305224TTCATTGACAACATTCAAAAAGGGGTGTATTTGAATGAAAAAGTT
scaffold_2 dna:supercontig supercontig:GCA_000346465.1:scaffold_2:1:26807724:1
position: 12170683-12170697
TTGTTTCTCTTGAAATTCTAACCATGATCC12170683AATGTTGTCAATGAAAAACAATTAAACCGAACAGAGGGAAACTTC
scaffold_4 dna:supercontig supercontig:GCA_000346465.1:scaffold_4:1:30528727:1
position: 5448151-5448165
CTGTTTATCTTGAAATTCTAACCATGATCC5448151AATGTTGTCAATGAAAAACAATTAAACCGAACAGAGGAAAACTTC
scaffold_4 dna:supercontig supercontig:GCA_000346465.1:scaffold_4:1:30528727:1
position: 12280128-12280142
TACATGCAAATATTCTTCCATACGCTTTTG12280128AATGTTGTCAATGAAATTTAGGAGGAGATGGTGAAGGAAGGAAGA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/Prupe1_0/TTCATTGACAACATT
lang : ja | db : Prupe1_0 | k : 0 | strand : | nogap : | query_string : TTCATTGACAACATT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.080 | 0.071 | search_plus_done; http://172.18.8.75:28194/match?q=TTCATTGACAACATT&k=0&no_gap=0&offset=0&limit=50
0.087 | 0.008 | search_minus_done; http://172.18.8.75:28194/match?q=AATGTTGTCAATGAA&k=0&no_gap=0&offset=0&limit=45
0.089 | 0.002 | cgi_end;

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