GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2024-09-08 08:43:18, GGGenome : Human genome, T2T-CHM13v2.0 (Jan, 2022)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

chr1:82837119-82837133
CTAATTAATGAATAGTAAGTATATTTTCTC82837119TTCATTGACAACATTTTTCCTCTTACTTTATTGTAAGAATACAAT
chr2:160824073-160824087
ATTGCAGCAAAGAAGCACATTTATATTCTA160824073TTCATTGACAACATTAGCATATAATGCAAATTTACTTTGGAACTT
chr3:15250689-15250703
ATTGTAATAGCCAGAAATTGGAAACATATA15250689TTCATTGACAACATTTAAGATTATAATATAGTCATATAATAGTCC
chr3:84624013-84624027
TTGGTTTTGTATATATTAAATAGTTGAAAC84624013TTCATTGACAACATTAAGTTTGTTTTCTAGGCTCTATTGGGATAA
chr4:16114876-16114890
AATGAAAGGCGTTTGAGGAAAGCCTGATAA16114876TTCATTGACAACATTACCATCAACCACACCTTACCATTCCTAGGA
chr4:65602716-65602730
TCTTCAAATATTTTACAGAGTTCAACTCTT65602716TTCATTGACAACATTATGACATTATGCTGATTGGATCCAGTGAGT
chr4:152236106-152236120
CAGAATATATTATCGCTTTAAACACAGATT152236106TTCATTGACAACATTTTGTGGGCACCCATTTAATATTAATATTAA
chr4:169147613-169147627
AAAAACCTCTGATTTTGTGTAACACTCCTT169147613TTCATTGACAACATTAAACAGCAATTAACTATTTGCTGATTACAT
chr6:63143211-63143225
CTATTTCAATCAACCATCTTGTAATCATAC63143211TTCATTGACAACATTTTACTCATACTATAATAAGTTGCTATTTCT
chr7:3638455-3638469
GTGGTGCCTGGCCTGAGTCAGCTCATTAGC3638455TTCATTGACAACATTGGTTCGTTCAACAAATATTGCCTGAGAAGA
chr8:31779849-31779863
GTATTTTTAAATTCATCGATATTTCCACTT31779849TTCATTGACAACATTATTAAGTTTTATTGTGTCTCTTTTTTCAAA
chr11:24603504-24603518
TTGAGTTTCCTGGAACATAGATATGTCTTG24603504TTCATTGACAACATTCTAGCATTGAGGACAGTGAATAGAGAAAAG
chr13:83424255-83424269
GCAGTCTGGAGGTTCTCCCTGGAGGCTGTA83424255TTCATTGACAACATTTCCTGAGGTAACTCACACTGAGGTGACAAC
chr18:29761281-29761295
ATATTTATATATGTATATATTTCATATTAT29761281TTCATTGACAACATTTACTTGGGAGATTTGTCTCAACAAAAATTA
chr19:43882266-43882280
AAGCCACCACACCCGGCCTATCTTAGCTTT43882266TTCATTGACAACATTAGTATAATGTTAACAGCTCTCCTAAGGGAG
chr2:196697199-196697213
AATGCCCCACATTTCATTAAGGGTGATGAC196697199AATGTTGTCAATGAAGAAGTTGCTTCTCATATAACTATACTGTCA
chr3:57240759-57240773
GCCTGTTTTTCATATGCATATGTAATAGGG57240759AATGTTGTCAATGAAAACACAATAGTATTTGGAGTGCAGCATAGT
chr3:100064270-100064284
AATTTGAATATTAATTTTAAAATTTATTCA100064270AATGTTGTCAATGAACATTGTCAGACATTTTGCAGCATTTCTTTA
chr5:9699165-9699179
GAGGGCCTTTCCAGCTCCAAAGTCGATGGC9699165AATGTTGTCAATGAAAGATCAACAGATCAGTGCATTATACCCAGG
chr7:34258801-34258815
TCTACAGATTTTGGATTTACCAGCCCCCAC34258801AATGTTGTCAATGAATTCCTTAAAATCTCTCTCTCTCTCTCTCTC
chr7:79974035-79974049
AACTAACACCCATAAAAGGTATGACTCTTT79974035AATGTTGTCAATGAAGATTTAACATAATATTCTATAACAAATATA
chr12:79086057-79086071
ATAAGATAGGTTTGTTCCAGAAGTTTAAAA79086057AATGTTGTCAATGAATTTGATAAAGTTTAATATTCACATTAAAAG
chr19:43712963-43712977
CTCCCTTAGGAGAGCTGTTAACATTATACT43712963AATGTTGTCAATGAAAAAGCTAAGATAGGCCAGGCATGGTGGCTT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/T2T-CHM13v2.0/TTCATTGACAACATT
lang : en | db : T2T-CHM13v2.0 | k : 0 | strand : | nogap : | query_string : TTCATTGACAACATT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.081 | 0.073 | search_plus_done; http://172.18.8.78:28922/match?q=TTCATTGACAACATT&k=0&no_gap=0&offset=0&limit=50
0.095 | 0.014 | search_minus_done; http://172.18.8.78:28922/match?q=AATGTTGTCAATGAA&k=0&no_gap=0&offset=0&limit=35
0.101 | 0.006 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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