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データベース:

ミスマッチ/ギャップを許容 ミスマッチのみ許容 : 塩基まで (検索する配列長の25%まで)
双方向を検索 +方向のみ検索 -方向のみ検索

2024-03-28 21:02:43, GGGenome : Citrullus lanatus subsp. vulgaris (Charleston Gray) genome, v1

Summary:

Results:

検索語に色がつきます(ミスマッチ挿入欠失

CG_Chr03
position: 18984140-18984154
GCAGCATTCCACGACACATTCGTAATAGTC18984140TTCATTGACAACATTTTGGTGTATTCTCGAACCGAGGCTGAGCAC
CG_Chr04
position: 18294644-18294658
AAGCACGAGGACAAAATAAGAAGGAACAAC18294644TTCATTGACAACATTCTTCTGTTTGGTAAGGTTTAACAAACAAGT
CG_Chr06
position: 1725798-1725812
TGAATTACTTCAAACATGACTTAACTTAGT1725798TTCATTGACAACATTAAAATTAACGTACTGCAACAGGGGTGCCAA
CG_Chr06
position: 7645805-7645819
TGAAGAAGATTGTGAGCTGTTGTCTTGAGT7645805TTCATTGACAACATTGAAGACTGTACCACGGAAAGATTGAAAAGA
CG_Chr02
position: 14153859-14153873
CCAAAAATGTTCTAAAAGGTAGCTAAGTCA14153859AATGTTGTCAATGAAAACCATGTAAAAGGCTCATAAAAAGTATCT
CG_Chr05
position: 19161869-19161883
AAAAAGTGTTCTTAAAAGGTAACTAAGTCA19161869AATGTTGTCAATGAAAACCATGTAGAAGGTTACTGAAAAGTGTCC
CG_Chr05
position: 34262451-34262465
CACAAGCTTGCTTACCTGGGTAAAACGGAA34262451AATGTTGTCAATGAAGAGAAGCACATCTTGCCCTTCAGCATCACG

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : http://gggenome.dbcls.jp/ja/WCG_v1/TTCATTGACAACATT
lang : ja | db : WCG_v1 | k : 0 | strand : | nogap : | query_string : TTCATTGACAACATT | format : html | download : | debug :

0.009 | 0.009 | search_start;
0.085 | 0.077 | search_plus_done; http://172.18.8.72:28214/match?q=TTCATTGACAACATT&k=0&no_gap=0&offset=0&limit=50
0.091 | 0.006 | search_minus_done; http://172.18.8.72:28214/match?q=AATGTTGTCAATGAA&k=0&no_gap=0&offset=0&limit=46
0.093 | 0.002 | cgi_end;

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