GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2024-04-19 23:11:59, GGGenome : Xenopus laevis genome, XenBase/NCBI 9.2

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

chr6L:
12854303-12854317
CACCAGCCCCATCACAGGATAACGAACTTC12854303TTCATTGACAACATTCTACGGCCGGAGTTCGGGAGGAGGAAAGAA
chr9_10S:
33695240-33695254
TCAATATGAAATTATAGAAAACAATTAGTC33695240TTCATTGACAACATTGACAACATTGACTTGTCATTCTGTTGCCTA
chr9_10S:
40560528-40560542
CACTTATTGTCTGTTACACATCGGATATGC40560528TTCATTGACAACATTTGGAAATATAAGGCTTGTAATTCATTTTGT
chr3L:
3928055-3928069
AGAATCCAGGTTTCATAGCAATTTAACGCT3928055TTCATTGACAACATTCTTTGCTAATCACGTGTAAATTTAATTACA
chr8L:
20126780-20126794
AGAGCAGAAGGTCTTGGTGGGAAAGCCAAG20126780TTCATTGACAACATTAGGTAAATCATGTTGGGGTAAACTGGAAAC
chr9_10L:
110936433-110936447
GGTTGTAAACGAATTATTGTTTGAAGCAAA110936433TTCATTGACAACATTTTTCTCATGGGACACAGATTCAGAAACACT
chr3S:
32667490-32667504
ATTCTCTTTTTCAAAATCTTCAAAGAGAGA32667490TTCATTGACAACATTTATAAGCCACATATAATACTCTTGGTGAGA
chr3S:
40502524-40502538
CATTTAGCAGTCGATGTTTACTACAATCAG40502524TTCATTGACAACATTTCTATTTTTTATAAAGAAACCCCCCCCCAA
chr3S:
77133123-77133137
ACTATATTAGACAAACAAAATGCTACAGTT77133123TTCATTGACAACATTGCATATGTCCTCTGAGGCTTTAGTGTACTG
chr2S:
121367745-121367759
CACCTCTGAACCAGCCTGGGTGAACCTGAA121367745AATGTTGTCAATGAAAAGCAACACATCTTGTCCCTCTTGATCTCT
chr2L:
139863839-139863853
CACCTCTGATCCAGCCTGGGTAAACCTGAA139863839AATGTTGTCAATGAAAAGCAACACATCTTGTCCCTCTTGATCTCT
chr3L:
91846639-91846653
TACCCCAAATAGCTATAAACAAGCTTTGTC91846639AATGTTGTCAATGAAAAGCATTTAGCATAACCTACTGACGTGCTC
chr9_10L:
24792782-24792796
AATAAGGATATGCGAATGGAAATGGTGCAA24792782AATGTTGTCAATGAACTCTTTAACCTATTGTTCAAAAAATAGGCA
chr9_10L:
108178719-108178733
ATGTACACACAAAGGCAACAAAGGCAATTG108178719AATGTTGTCAATGAAAGCAAAAGCGGTCTTAGCTGCCCGCAGGTG
chr5L:
110577980-110577994
GTAAGTACCTGCATTCAACTCCTTCACACT110577980AATGTTGTCAATGAAAGAACTAGTGTAAACGAACAGGATGTTCTA
chr6S:
43455273-43455287
AGAAATCATCCTGCCAAATATTTTAAAGAC43455273AATGTTGTCAATGAAAAGCCCAAGCTGCGGTGCGGGAAAGCGACC
chr6S:
99937662-99937676
CTTTCATGGTAAAAGTATGGAGCAATATTC99937662AATGTTGTCAATGAAAGGTCAGGCCATTTGCATTCATTAGCAGCC
chr3S:
62715797-62715811
AATTGGGCAGCAAACTGGAAAATGAGGTTC62715797AATGTTGTCAATGAATGCAAGGCAATGCACTTTTGTAGAAATAAT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : http://gggenome.dbcls.jp/Xenla9.2/TTCATTGACAACATT
lang : en | db : Xenla9.2 | k : 0 | strand : | nogap : | query_string : TTCATTGACAACATT | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.083 | 0.074 | search_plus_done; http://172.18.8.77:28888/match?q=TTCATTGACAACATT&k=0&no_gap=0&offset=0&limit=50
0.093 | 0.010 | search_minus_done; http://172.18.8.77:28888/match?q=AATGTTGTCAATGAA&k=0&no_gap=0&offset=0&limit=41
0.098 | 0.006 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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