GGGenome Help | Japanese

Database:

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2021-11-29 11:47:26, GGGenome : American alligator genome, allMis0.2/allMis1 (Aug, 2012)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

JH733458:126729-126743
CTTCCTGTATCTGAGTAAATCAAGAGCAAC126729TTCATTGACAACATTGTAAAGATGTACAGCTCAGAACCAGATTCT
JH733470:598778-598792
AGCTGTTTTGGCTTTGAGCACCTCTTCAGT598778TTCATTGACAACATTTTATGGTGGGAGCCATCCTGGTGAATGTCA
JH737147:639391-639405
TGTTCAGTTCTCAGTTTTGATAACTGATTA639391TTCATTGACAACATTATTTCTGGTCTTTAAGCCAGTTGTTTATCC
JH737379:610257-610271
CAAGATTTTAGTCTGAAGATTTTTCAAAGA610257TTCATTGACAACATTTTAACAGTGAGTTCAGTGGGTACTTCAGGT
JH731505:618169-618183
GATCAGTGGAAGCGAGCTATGGATTATCTC618169AATGTTGTCAATGAACTTAATTACATGACTCAGATTGTTATCATG
JH733899:53761-53775
ACCACAGCAGCCAATTTCCTGCCTCTATGA53761AATGTTGTCAATGAAATGTTGCTCAAGAGATCCCGAGTAGAGGGC
JH735506:239053-239067
TATTCAATTACCTTTATCAATTGAATGCGT239053AATGTTGTCAATGAATGAAATCATGTTTGTTTCAAAAGACTTATT
JH736379:773339-773353
ATCACATCTGTGAAGCTTGAGCATAGTCTT773339AATGTTGTCAATGAAAACTAGCATTTTTACATTCTAGGATTAGCA
JH737404:202015-202029
ACTGGCATCAGCGCGTATGCCCCAACTCTT202015AATGTTGTCAATGAAACCAAGGAGGAATTCTATGCCAACCTTGAC
JH737458:262679-262693
ATTTTAACACCTTCTTACTTCATATCCAAT262679AATGTTGTCAATGAAAAAGCAATGATTTGTCTATTGTTGGAGGCA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : http://gggenome.dbcls.jp/allMis1/TTCATTGACAACATT
lang : en | db : allMis1 | k : 0 | strand : | nogap : | query_string : TTCATTGACAACATT | format : html | download : | debug :

0.008 | 0.008 | search_start;
0.081 | 0.073 | search_plus_done; http://172.18.8.76:28069/match?q=TTCATTGACAACATT&k=0&no_gap=0&offset=0&limit=50
0.086 | 0.005 | search_minus_done; http://172.18.8.76:28069/match?q=AATGTTGTCAATGAA&k=0&no_gap=0&offset=0&limit=46
0.087 | 0.001 | cgi_end;

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