GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2024-04-16 15:44:45, GGGenome : Lizard genome, Broad AnoCar2.0/anoCar2 (May, 2010)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

chr1:69892575-69892589
CCATGAAAACCTTCCACAACACATTTACCC69892575AATGTTGTCAATGAAGATTTATAGATCTCCAGGAATTAAGGCAGG
chr1:72247048-72247062
TAAATGGATACAGGATTTTAGATCCAATGC72247048AATGTTGTCAATGAATGCATTTCTGATTGTTAGCTCTGAACTTCT
chr5:102888040-102888054
CATACTGAACATTTTAAACAAGAAGATAGA102888040AATGTTGTCAATGAATAAAAACACTCCTCAAAAATTTTGATGAAT
chrUn_GL343236:1522796-1522810
TAAGGTACATTCTTTGTAATTCATCCTGAA1522796AATGTTGTCAATGAAGGAAGACTTGCTGATGAAAGAAGAGTGATC
chrUn_GL343272:1296334-1296348
GTCAGAAAAGTCTGACAACAGAATAAATCC1296334AATGTTGTCAATGAAACTACGAAGCAGTCTGGTGTTGTGGTTTGA
chr1:149949293-149949307
TCTTTGCTTTGCAATGTACACAAACTTTAT149949293TTCATTGACAACATTATTTAAAATATTGTGCATAAAATTACCTTC
chr1:262700235-262700249
AGTTCAAGATTGCAGAAAGGAAGTTGTGCA262700235TTCATTGACAACATTCACATTGTACTTTATGCATATCAGTGTGAA
chr2:20688667-20688681
AACCTAAGTGTACTTTGACATTGAGATGCT20688667TTCATTGACAACATTTAAGCATTCCTGTCCTAGATCAAGCAAGAA
chr3:166036616-166036630
GTGCATATGTGAATACTCTCACACAAAGAT166036616TTCATTGACAACATTCATATTCTGGAGCCCCCAGTGGTGCAGTGA
chr5:13337424-13337438
TACAACATTGACTGGATCTTCTACCTTTAA13337424TTCATTGACAACATTTTTACTTAAAACTTTATTATAGCTCAAAGT
chrUn_GL343288:1585456-1585470
GTCTTGCTATCACTGCTTACACTGGCACAG1585456TTCATTGACAACATTTCATCCAATGTTTCCAGCCGATGAAGAGAA
chrUn_GL343303:298467-298481
AAGAGGAAGAATTTGGGGTCTAAGTTAATT298467TTCATTGACAACATTTTTTGTGTTCTTTGTTGTATTTCTTTCCAA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : http://gggenome.dbcls.jp/anoCar2/AATGTTGTCAATGAA
lang : en | db : anoCar2 | k : 0 | strand : | nogap : | query_string : AATGTTGTCAATGAA | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.080 | 0.072 | search_plus_done; http://172.18.8.76:28077/match?q=AATGTTGTCAATGAA&k=0&no_gap=0&offset=0&limit=50
0.085 | 0.005 | search_minus_done; http://172.18.8.76:28077/match?q=TTCATTGACAACATT&k=0&no_gap=0&offset=0&limit=45
0.086 | 0.002 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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