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データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2024-11-24 22:12:28, GGGenome : Lizard genome, Broad AnoCar2.0/anoCar2 (May, 2010)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

chr1:69892575-69892589
CCATGAAAACCTTCCACAACACATTTACCC69892575AATGTTGTCAATGAAGATTTATAGATCTCCAGGAATTAAGGCAGG
chr1:72247048-72247062
TAAATGGATACAGGATTTTAGATCCAATGC72247048AATGTTGTCAATGAATGCATTTCTGATTGTTAGCTCTGAACTTCT
chr5:102888040-102888054
CATACTGAACATTTTAAACAAGAAGATAGA102888040AATGTTGTCAATGAATAAAAACACTCCTCAAAAATTTTGATGAAT
chrUn_GL343236:1522796-1522810
TAAGGTACATTCTTTGTAATTCATCCTGAA1522796AATGTTGTCAATGAAGGAAGACTTGCTGATGAAAGAAGAGTGATC
chrUn_GL343272:1296334-1296348
GTCAGAAAAGTCTGACAACAGAATAAATCC1296334AATGTTGTCAATGAAACTACGAAGCAGTCTGGTGTTGTGGTTTGA
chr1:149949293-149949307
TCTTTGCTTTGCAATGTACACAAACTTTAT149949293TTCATTGACAACATTATTTAAAATATTGTGCATAAAATTACCTTC
chr1:262700235-262700249
AGTTCAAGATTGCAGAAAGGAAGTTGTGCA262700235TTCATTGACAACATTCACATTGTACTTTATGCATATCAGTGTGAA
chr2:20688667-20688681
AACCTAAGTGTACTTTGACATTGAGATGCT20688667TTCATTGACAACATTTAAGCATTCCTGTCCTAGATCAAGCAAGAA
chr3:166036616-166036630
GTGCATATGTGAATACTCTCACACAAAGAT166036616TTCATTGACAACATTCATATTCTGGAGCCCCCAGTGGTGCAGTGA
chr5:13337424-13337438
TACAACATTGACTGGATCTTCTACCTTTAA13337424TTCATTGACAACATTTTTACTTAAAACTTTATTATAGCTCAAAGT
chrUn_GL343288:1585456-1585470
GTCTTGCTATCACTGCTTACACTGGCACAG1585456TTCATTGACAACATTTCATCCAATGTTTCCAGCCGATGAAGAGAA
chrUn_GL343303:298467-298481
AAGAGGAAGAATTTGGGGTCTAAGTTAATT298467TTCATTGACAACATTTTTTGTGTTCTTTGTTGTATTTCTTTCCAA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/anoCar2/AATGTTGTCAATGAA
lang : ja | db : anoCar2 | k : 0 | strand : | nogap : | query_string : AATGTTGTCAATGAA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.080 | 0.072 | search_plus_done; http://172.18.8.76:28077/match?q=AATGTTGTCAATGAA&k=0&no_gap=0&offset=0&limit=50
0.085 | 0.005 | search_minus_done; http://172.18.8.76:28077/match?q=TTCATTGACAACATT&k=0&no_gap=0&offset=0&limit=45
0.087 | 0.002 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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