GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2024-12-04 02:25:30, GGGenome : Brown kiwi genome, MPI-EVA AptMant0/aptMan1 (Jun, 2015)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

NW_013991530v1:430179-430193
CTCGGAGATCCCTTCTCACCATGGGAAGAC430179TTCATTGACAACATTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT
NW_013995860v1:44255750-44255764
TTATTTTAACAGTGGGGCTTTTTTTTTTTT44255750TTCATTGACAACATTTAAAGTTAATCCAGTGGCTATGAATGTCAG
NW_013996185v1:308523-308537
TACTTTGGGGCTTTTACCAGAAATACAACA308523TTCATTGACAACATTCAAAACTATCTCCAAATATGTTCTGGATGC
NW_013997578v1:11998661-11998675
GGCTTGCTAGAATGAAGCTGCCTTTTTAAG11998661TTCATTGACAACATTAAACAACCTTCTTGAGTGTTTATTGTGAAA
NW_014004943v1:1170596-1170610
GTCTAGCATAATTATCAAGCTTAGCTGCGT1170596TTCATTGACAACATTCTATCTAACCTGGTGAGGTAATTTTAGCTT
NW_014004943v1:8260848-8260862
AGTTGAAATCACACAACAAAGTTTCGCTGT8260848TTCATTGACAACATTCTTTAAGAAGCAATTGTCAGCAGACAAATG
NW_013990105v1:4693348-4693362
AGAGTTCCCCCATACTCCTTTAACCAAATA4693348AATGTTGTCAATGAAATGCTTTTCCATTTAAATGTATCAGTTCAT
NW_014005053v1:8197-8211
GAACAATGGAAGCGAGCTATGGATTATCTG8197AATGTTGTCAATGAACTCAATTACATGACACAGATTGTTATCATG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/aptMan1/TTCATTGACAACATT
lang : en | db : aptMan1 | k : 0 | strand : | nogap : | query_string : TTCATTGACAACATT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.084 | 0.075 | search_plus_done; http://172.18.8.76:28753/match?q=TTCATTGACAACATT&k=0&no_gap=0&offset=0&limit=50
0.090 | 0.005 | search_minus_done; http://172.18.8.76:28753/match?q=AATGTTGTCAATGAA&k=0&no_gap=0&offset=0&limit=44
0.090 | 0.001 | cgi_end;

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