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データベース:

ミスマッチ/ギャップを許容 ミスマッチのみ許容 : 塩基まで (検索する配列長の25%まで)
双方向を検索 +方向のみ検索 -方向のみ検索

2024-05-05 21:53:31, GGGenome : Cow genome, Btau_4.6.1/bosTau7 (Oct, 2011)

Summary:

Results:

検索語に色がつきます(ミスマッチ挿入欠失

chr4:76449596-76449610
ACTCCCCTAAATATAAGTCCCATTTCTCCT76449596TTCATTGACAACATTTCAAACAGTATATGTCTTCTGTTTAAATTT
chr7:107529683-107529697
CATGATAACAATCTGAGTCATGTAGTTGAG107529683TTCATTGACAACATTTAAATAATCCATAGCTCGTTTCCACTGTTC
chr9:14007603-14007617
CCAGAGCTTCTGCTTCTATCCTGAATTAGG14007603TTCATTGACAACATTCCCTTCACCACCCTACTCTTTCTTATACTT
chr13:82576534-82576548
AGAAGTGTAATTACTGGGTCAGAATATGGA82576534TTCATTGACAACATTTGGGCTTGTTAAAAATTCAGGTTATTGAGT
chr24:24557145-24557159
TAGAAGTTCTTAATGTTTGTTTTCTTGGCT24557145TTCATTGACAACATTCCTTTTTGTGTGACCTCATCCACTACCAGC
chrUn_JH122238:26186-26200
CAGTGACTCCCCCTGACTCACTGCTTTAAA26186TTCATTGACAACATTTTTTAAAAGGTAGAGAATTCTCATGAAAAG
chr2:60817635-60817649
GAATTTTTCACCCACAGAGTCAAAGGCTTT60817635AATGTTGTCAATGAAATGGAAGTAGATGTTTTTCTGGAATTCCCT
chr4:8709576-8709590
CTTTATTTTCTTTTGCTACAAAGTGTTCGA8709576AATGTTGTCAATGAAATGATTACTTTAAAAAAGGCAGATCATTTA
chr6:45226664-45226678
CTCTGACCCACCGTGGCATTCTCACTTCCC45226664AATGTTGTCAATGAACTTCAAACTAAGCTCTGAAGGTCAACTGGC
chr6:64395931-64395945
TTTGTTGTGATCCATATAGTCAAAGGTTTT64395931AATGTTGTCAATGAAACAGAAGTAGATGTTTTTCTGGAATTCCCT
chr7:64844840-64844854
GATGTGTGGAGGGAATGAAAGAGATTTTTC64844840AATGTTGTCAATGAATGTGTAGAGCCCCTGGTTAAAAACATATAT
chr9:85135741-85135755
CAACCACAAGAGATAGGCAGAATTTTCATC85135741AATGTTGTCAATGAATAAACTGAAGCAGAGAGAAGTTAAGCAAGA
chr14:39824363-39824377
TGTTTATATGTAACAAATTGGAAAACTTCA39824363AATGTTGTCAATGAAATCTCTTAGAAACCAATGCAAATATACTTG
chr21:3835583-3835597
AAATGTCTAGTTAAATGATGCTTTCGTTTT3835583AATGTTGTCAATGAAACATCTTAAATCTCATTGCTCTGCTCACAG
chr23:11787794-11787808
CAGTGCCTGGCGCACAGTAGGTGTGCAGTA11787794AATGTTGTCAATGAATTGATGGAAGGATGGATGGATGAATTCCAG

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : http://gggenome.dbcls.jp/ja/bosTau7/TTCATTGACAACATT
lang : ja | db : bosTau7 | k : 0 | strand : | nogap : | query_string : TTCATTGACAACATT | format : html | download : | debug :

0.009 | 0.009 | search_start;
0.080 | 0.071 | search_plus_done; http://172.18.8.78:28028/match?q=TTCATTGACAACATT&k=0&no_gap=0&offset=0&limit=50
0.084 | 0.004 | search_minus_done; http://172.18.8.78:28028/match?q=AATGTTGTCAATGAA&k=0&no_gap=0&offset=0&limit=44
0.086 | 0.002 | cgi_end;

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