GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2024-11-23 19:01:15, GGGenome : Marmoset genome, calJacRKC1912 (Dec, 2019)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

chr2
position: 44989381-44989395
TTAAGTCTTCTTAATTTACATTGCTATTAT44989381TTCATTGACAACATTAATAACTGTGTAACAAACTATGCAAGTTTT
chr2
position: 184253246-184253260
GTGGTGCCTGGCCTGAGTCAGCACATTAGC184253246TTCATTGACAACATTGGTTCATTCAACAAATAATTGCCTGAGAAG
chr4
position: 167363610-167363624
CTTTCAAATATTTTACAGAGTTTGACTCTT167363610TTCATTGACAACATTAACACCACCCAAAAGAGAAACGTGAGCCAA
chr5
position: 42098707-42098721
CATATCTCAAAATAAGAGCCATCCAATGGG42098707TTCATTGACAACATTATGCTGAATGGGTAAAAGCTGGAAGCATTT
chr6
position: 92566165-92566179
ATTGCAGCAAAGTAGCACATTTATATTCTA92566165TTCATTGACAACATTAGCATATAATGCAAATTTACTTTGGAACTT
chr9
position: 41676410-41676424
TACATGAATCTACATGACTTTTCATTCTTT41676410TTCATTGACAACATTTCATGGAAAGAAATTCTACAGGAGAGGGTT
chr10
position: 51619658-51619672
CAGAAATTTTGGAAATGCTACTGTTGCTTT51619658TTCATTGACAACATTAGCTGGGACTGTATTAAATATCAAATATAT
chr19
position: 37649492-37649506
GCATACGGAGAAACTGGATAGCAAAATAAA37649492TTCATTGACAACATTTCCAACAAAACTAGGTGACAAACCATGAAT
chr1
position: 29627070-29627084
GTTGTCACCTCAGTGTGAGTTACCTCAGGC29627070AATGTTGTCAATGAATACAGCCTCCAGGGAGAAACTTCAGACTGC
chr3
position: 24928352-24928366
TGTAGTCAGCAAATAGTTAATTGCTGTTTA24928352AATGTTGTCAATGAAAAGGAGTATTACACAAAATCAGAGGATTTA
chr3
position: 80048043-80048057
ATATGAAAATTCAATAAAAGTACATTACAA80048043AATGTTGTCAATGAAATTGTAATTATTTTTCAGACTATGACATTA
chr4
position: 88414603-88414617
TTTAGGTTTTATGTAGTTTTCAGATTGTAT88414603AATGTTGTCAATGAATTCAAGTAAAAACAAACTTCAAATGAGACA
chr7
position: 104870853-104870867
AATGAGACTCGAGTTGGCATCTTCATGGGC104870853AATGTTGTCAATGAACTGTTTTCTCAGCAGCCTCCTGGTGAGTGA
chr10
position: 34724846-34724860
GAAAAAAAACCCAGAACTTTTAAAATGAAA34724846AATGTTGTCAATGAAACTAAAAATATCTTGGACAAGTTTAACATA
chr11
position: 38520572-38520586
CACACAAAGCCATGCTTCCTGAATCCATAA38520572AATGTTGTCAATGAAATGGTTAAAATTGTTGTATATATTGTGTCC
chr13
position: 13714366-13714380
TCTGAGACATGACACCTGGGTTTAGATCCT13714366AATGTTGTCAATGAACACAACTTCTTTGGTCATTCCCAATATATT
chrX
position: 107976730-107976744
TATGCCTTTCTCTTAATGTACAAGTAAATA107976730AATGTTGTCAATGAAATGGGAATTTTTATTGGGTTGGGGATTTGT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/calJacRKC1912_chrM_d3g2101/TTCATTGACAACATT
lang : ja | db : calJacRKC1912_chrM_d3g2101 | k : 0 | strand : | nogap : | query_string : TTCATTGACAACATT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.083 | 0.074 | search_plus_done; http://172.18.8.75:28815/match?q=TTCATTGACAACATT&k=0&no_gap=0&offset=0&limit=50
0.093 | 0.010 | search_minus_done; http://172.18.8.75:28815/match?q=AATGTTGTCAATGAA&k=0&no_gap=0&offset=0&limit=42
0.100 | 0.007 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).