GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2024-11-21 20:02:20, GGGenome : Elephant shark genome, Callorhinchus_milii-6.1.3/calMil1 (Dec, 2013)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

KI635857:5289376-5289390
ATTGACTGATTTTTATCCGAAGAATCTCAG5289376TTCATTGACAACATTTTTTCATTGCCCTACAACTGCTGCCTTTCC
KI635882:2234941-2234955
AAAAGTGTAAGAGAACTTTTTGCATTTTGT2234941TTCATTGACAACATTTTTGCCTAAGAGGAAATGGTTCTGTTGCCC
KI635900:4486157-4486171
CTCAAACCATTCAGATCCGGTCTTAAGTGT4486157TTCATTGACAACATTGGAACAAAACCTTCATTTCAAAGCTGGCTG
KI636071:376475-376489
AACTGAACATCCGAAACCTCCACATGGTTA376475TTCATTGACAACATTCTGTTCCCGAGTGTGCCATCTTGGAGTCAG
KI636423:6933-6947
CATTTCCGTTTATTCTAATTGTTAGATTAT6933TTCATTGACAACATTCGCCAGTGATGTATGTCTCTGTGTGACTGA
KI635857:16229534-16229548
CCGGGGGTAATAATCCCTTAAAAAAATGAT16229534AATGTTGTCAATGAATCCACGACTGTTTGTGGGACGCTGCTGTGC
KI635916:676130-676144
TCGGAAGAGCTCCTCGGCTCACTTTTAATG676130AATGTTGTCAATGAAAAGAATTTTGTTATCGATCGGAACCAAGAG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/calMil1/TTCATTGACAACATT
lang : en | db : calMil1 | k : 0 | strand : | nogap : | query_string : TTCATTGACAACATT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.082 | 0.073 | search_plus_done; http://172.18.8.76:28074/match?q=TTCATTGACAACATT&k=0&no_gap=0&offset=0&limit=50
0.087 | 0.005 | search_minus_done; http://172.18.8.76:28074/match?q=AATGTTGTCAATGAA&k=0&no_gap=0&offset=0&limit=45
0.088 | 0.001 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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