GGGenome Help | Japanese

Database:

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2024-03-29 03:32:43, GGGenome : Ciona intestinalis genome, JGI 2.1/ci2 (Mar, 2005)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

chr01q:1233788-1233802
AGCACTATTCCACTTTCTATACTTGCGTTT1233788TTCATTGACAACATTAATGTGATGCGGTGTCATCTCATCATGCCC
chr03q:1519269-1519283
ATAAATTAGAACTTATAAAAGTTATTAATA1519269AATGTTGTCAATGAACCACCTATGTTAAATACAAACCTAAAACGT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : http://gggenome.dbcls.jp/ci2/TTCATTGACAACATT
lang : en | db : ci2 | k : 0 | strand : | nogap : | query_string : TTCATTGACAACATT | format : html | download : | debug :

0.008 | 0.008 | search_start;
0.081 | 0.073 | search_plus_done; http://172.18.8.76:28090/match?q=TTCATTGACAACATT&k=0&no_gap=0&offset=0&limit=50
0.084 | 0.003 | search_minus_done; http://172.18.8.76:28090/match?q=AATGTTGTCAATGAA&k=0&no_gap=0&offset=0&limit=49
0.084 | 0.000 | cgi_end;

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