GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2024-04-20 15:16:44, GGGenome : Ciona intestinalis genome, Kyoto KH/ci3 (Apr, 2011)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

chr3:2585985-2585999
ACGTTTTAGGTTTGTGTTTAACATAGGTGG2585985TTCATTGACAACATTTATTAATAACTTTTATAAGTTCTAATTTAT
chrUn_NW_004190468v1:32228-32242
AGCACTATTCCACTTTCTATACTTGCGTTT32228TTCATTGACAACATTAATGTGATGCGGTGTCATCTCATCATGCCC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : http://gggenome.dbcls.jp/ci3/TTCATTGACAACATT
lang : en | db : ci3 | k : 0 | strand : | nogap : | query_string : TTCATTGACAACATT | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.082 | 0.074 | search_plus_done; http://172.18.8.76:28777/match?q=TTCATTGACAACATT&k=0&no_gap=0&offset=0&limit=50
0.086 | 0.004 | search_minus_done; http://172.18.8.76:28777/match?q=AATGTTGTCAATGAA&k=0&no_gap=0&offset=0&limit=48
0.086 | 0.000 | cgi_end;

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