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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2024-11-21 21:04:05, GGGenome : Zebrafish genome, GRCz11/danRer11 (May, 2017)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

chr2:37030025-37030039
CGAGTGACATATTTACTGTACATTTTAAGA37030025TTCATTGACAACATTCAATTGAAACATTTAATTTCAGTTTGCTTT
chr3:50740109-50740123
GCGTCTGTTGTGGCGAAACTGTTGTCCTGC50740109TTCATTGACAACATTGTATGACCTTGGCTTATTTCGTTTTGAAAC
chr5:2792249-2792263
TTATGTTTGAGGTATAGGCCTATGCTTGCA2792249TTCATTGACAACATTATTAGACCATTTAATTCACTGGTAAAAATC
chr6:32683871-32683885
GAAGGAGAGAATGCCAACAACTTTCCTCGG32683871TTCATTGACAACATTACTGAACAACAACAAGTAAGGGTCTTAAAG
chr7:14947924-14947938
GCGTCTGTTGCGGCGAAACTGTTGTCCTGC14947924TTCATTGACAACATTGTATGACCTTGGCTCATTTCTTTTTGAAAC
chr7:61783113-61783127
TATTATGTTTGAGACATATGCTTGCAATCT61783113TTCATTGACAACATTATTAGACCATTTTTTCACTGGTCAAATCAA
chr11:5710630-5710644
GCGTCTGTTGCGGCGAAACTGTTGTCCTGC5710630TTCATTGACAACATTGTATGACCTTGGCTCATTTCTTTTTGAAAC
chr12:16155211-16155225
TTTTTTTTTTTTTGTACAATACAAAAAAGA16155211TTCATTGACAACATTTAATTTAAACATCTCAGTTGAAATTGTTGT
chr13:7679846-7679860
ATTTTGAATTATATTTGAAATATGCTTGCA7679846TTCATTGACAACATTATTAGACCATTTAATTCACTGGTAAAATCA
chr16:31063661-31063675
GTTTGAGATATAGGCCTATGCTTACAATCT31063661TTCATTGACAACATTATAAGACCATTTAATTCACTGGTAAAATCA
chr18:15022895-15022909
TGCAAAAAAGTGATCTAAATGGCAATGCTC15022895TTCATTGACAACATTCATCACTTGTAGTAGTACACACAAAAAAGT
chr18:48987766-48987780
CCCCTACATACTTTCCATGCAAAGTTAGTC48987766TTCATTGACAACATTGAAAGCTCAGATCCTTGCATTTTAACCTGG
chr23:11372821-11372835
TATTATGTTTGTGATATATGCTTGTCATTT11372821TTCATTGACAACATTATTAGACCTTTTGTTTTTACTGATAAAATG
chr24_KZ115713v1_alt:298882-298896
AATGTCAAGGTTTTGAAAGTTTCTGATTGG298882TTCATTGACAACATTTGAGTTAATTGGAAACACAACTGTAGAATA
chr1:39835972-39835986
CCACATGGGAAAAGCTAGGCTTCTGCCGGA39835972AATGTTGTCAATGAAACCAGCAAGGAGATCTCAACCTGCGCTCCG
chr2:58435820-58435834
GTTTCAAAAAGAAATGAGCCAAGGTCATAC58435820AATGTTGTCAATGAAGCAGGACAACAGTTTCGCCGCAACAGACGC
chr4:24032860-24032874
GCAGAGCTTCAAAAAAGCATGTTTCAATTA24032860AATGTTGTCAATGAATCAGATTTTTTAAAATGTAAATAATATCAA
chr4:56529567-56529581
GTTTCAAAAAGAAATGAGCCAAGGTCATAC56529567AATGTTGTCAATGAAGCAGGACAACAGTTTCGCCGCAACAGACGC
chr4:65962930-65962944
GTTTCAAAAAGAAATGAGCCAAGGTCATAC65962930AATGTTGTCAATGAAGCAGGACAACAGTTTCGCCGCAACAGACGC
chr4:66960832-66960846
GTTTCAAAAAGAAATGAGCCAAGGTCATAC66960832AATGTTGTCAATGAAGCAGGACAACAGTTTCGCCGCAACAGACGC
chr5:46584819-46584833
CATTTTTCCAGTGAAAACTAATGGTTTAAT46584819AATGTTGTCAATGAAAGATGACAAGCACATAAATCAACTTTATAA
chr7:17222163-17222177
AATTTTGTCAATAAATAAAACTTGACTGAA17222163AATGTTGTCAATGAATCAGAAACTATTAAAAAGTACCAAACAAAT
chr7:32186467-32186481
TGATTTTACCAGTGAATAAAATGGTCTAAT32186467AATGTTGTCAATGAAAGATTGCAAGCATATATCTCAAACATAATT
chr8_KZ115263v1_alt:226640-226654
TGATTTTACCAGCAGAAAAAATGGTCTAAT226640AATGTTGTCAATGAAAAACAACATGCATATGTCTGAAACATAATA
chr15:36991741-36991755
AAGCCATCTGAAATTAAATGTTTCAATTTA36991741AATGTTGTCAATGAATCAGATTTAGTTTCAAGTGTACATACGGCA
chr20:44620476-44620490
GTTGAGCTACAAATAAGAAAACTGAAATTA44620476AATGTTGTCAATGAATCAGATTTAAAAAAAATTTAAATACTGTCA
chrUn_KZ116037v1:11422-11436
AATGTTGTCAATAAATAAAACTTGACTGAA11422AATGTTGTCAATGAATCAGAAACTATTAAAAAGTACCAAACAAAT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/danRer11/TTCATTGACAACATT
lang : en | db : danRer11 | k : 0 | strand : | nogap : | query_string : TTCATTGACAACATT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.084 | 0.075 | search_plus_done; http://172.18.8.76:28089/match?q=TTCATTGACAACATT&k=0&no_gap=0&offset=0&limit=50
0.091 | 0.008 | search_minus_done; http://172.18.8.76:28089/match?q=AATGTTGTCAATGAA&k=0&no_gap=0&offset=0&limit=36
0.095 | 0.003 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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