# [ GGGenome | 2025-04-04 23:10:19 ] # database: DDBJ release 134.0 (Mar, 2024) # query: AAAGACGAGCAGATGATACAGC # count: 9 # query: GCTGTATCATCTGCTCGTCTTT # count: 8 # name strand start end snippet snippet_pos snippet_end query sbjct align edit match mis del ins PE259861|PE259861.1 KR 1020230095709-A/8: Kompetitive Allele Specific PCR (KASP) marker set for seed purity check of Chinese cabbage(Brassica rapa spp. pekinensis) and methods for efficient marker development. + 382 403 AGAGCTTCACTGGAGCTTCTTCTTCGGCGTGATCGTCGTCTACGGCGTNAGCCAAGGGCTNGGCAAAGGTCTCAGCAAAGTCAGCACGCAGTACTACTTCAAAGACGAGCAGATGATACAGCCTTCTGAAGCTCAGGTCTACGTTGGTTTGATTCAGGTTCCTTGGATCATTAAACCGGTTTGGGGTCTGTTGACCGATGTTGTACCGGTTCTTGGTTAC 282 501 AAAGACGAGCAGATGATACAGC AAAGACGAGCAGATGATACAGC |||||||||||||||||||||| ====================== 22 0 0 0 EL625966|EL625966.1 EST3472 3-9 DAP Brassica Napus seed cDNA library Brassica napus cDNA clone B153D051, mRNA sequence. + 441 462 AGAGCTTCACTGGAGCTTCTTCTTCGGCGTGATCGTCGTCTACGGCGTAAGCCAAGGGCTCGGCAAAGGGCTCAGCAAAGTCAGCACGCAGTACTACTTCAAAGACGAGCAGATGATACAGCCTTCTGAAGCTCAGGTCTACGTTGGTTTGATTCAGGTTCCTTGGATCATTAAACCGGTTTGGGGTCTGTTGACCGATGTTGTACCGGTTCTTGGTTACAG 341 562 AAAGACGAGCAGATGATACAGC AAAGACGAGCAGATGATACAGC |||||||||||||||||||||| ====================== 22 0 0 0 EY900065|EY900065.1 RR1E182TF RR1(CS) Raphanus raphanistrum subsp. maritimus cDNA 5', mRNA sequence. + 239 260 AGAGCTTCACTGGAGCTTCTTCTTCGGCGTGATCGTCGTCTACGGAGTTAGCCAAGGTCTCGGCAAAGGTCTCAGCAAAGTGAGCACGCAGTACTACTTCAAAGACGAGCAGATGATACAGCCTTCCCAAGCTCAGGTTTACGTTGGTTTGATTCAGGTTCCTTGGACCATCAAACCGGTTTGGGGTCTGTTGACCGATGTTGTACCGGTTCTTGGTTACAG 139 360 AAAGACGAGCAGATGATACAGC AAAGACGAGCAGATGATACAGC |||||||||||||||||||||| ====================== 22 0 0 0 FX784657|FX784657.1 TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_80641. + 234 255 AGAGCTTCACTGGAGCTTCTTCTTCGGCGTGATCGTCGTCTACGGAGTTAGCCAAGGTCTCGGCAAAGGTCTCAGCAAAGTGAGCACGCAGTACTACTTCAAAGACGAGCAGATGATACAGCCTTCCCAAGCTCAGGTTTACGTTGGTTTGATTCAGGTTCCTTGGATCATCAAACCGG 134 312 AAAGACGAGCAGATGATACAGC AAAGACGAGCAGATGATACAGC |||||||||||||||||||||| ====================== 22 0 0 0 CP123887|CP123887.1 Brassica napus cultivar Xiang5A chromosome 12. + 55833491 55833512 AGAGCTTCACTGGAGCTTCTTCTTCGGCGTGATCGTCGTCTACGGCGTAAGCCAAGGGCTCGGCAAAGGGCTCAGCAAAGTCAGCACGCAGTACTACTTCAAAGACGAGCAGATGATACAGCCTTCTGAAGCTCAGGTCTACGTTGGTTTGATTCAGGTTCCTTGGATCATTAAACCGGTTTGGGGTCTGTTGACCGATGTTGTACCGGTTCTTGGTTACAG 55833391 55833612 AAAGACGAGCAGATGATACAGC AAAGACGAGCAGATGATACAGC |||||||||||||||||||||| ====================== 22 0 0 0 HG994361|HG994361.1 Brassica napus genome assembly, chromosome: A07. + 29114192 29114213 AGAGCTTCACTGGAGCTTCTTCTTCGGCGTGATCGTCGTCTACGGCGTAAGCCAAGGGCTCGGCAAAGGTCTCAGCAAAGTCAGCACGCAGTACTACTTCAAAGACGAGCAGATGATACAGCCTTCCGAAGCTCAGGTTTACGTTGGTTTGATTCAGGTTCCTTGGATCATTAAACCGGTTTGGGGTCTGTTGACAGATGTTGTACCGGTTCTTGGTTACAG 29114092 29114313 AAAGACGAGCAGATGATACAGC AAAGACGAGCAGATGATACAGC |||||||||||||||||||||| ====================== 22 0 0 0 LR031574|LR031574.1 Brassica rapa genome, scaffold: A07. + 27989345 27989366 AGAGCTTCACTGGAGCTTCTTCTTCGGCGTGATCGTCGTCTACGGCGTAAGCCAAGGGCTGGGCAAAGGTCTCAGCAAAGTCAGCACGCAGTACTACTTCAAAGACGAGCAGATGATACAGCCTTCTGAAGCTCAGGTCTACGTTGGTTTGATTCAGGTTCCTTGGATCATTAAACCGGTTTGGGGTCTGTTGACCGATGTTGTACCGGTTCTTGGTTACAG 27989245 27989466 AAAGACGAGCAGATGATACAGC AAAGACGAGCAGATGATACAGC |||||||||||||||||||||| ====================== 22 0 0 0 LR031880|LR031880.1 Brassica oleracea HDEM genome, scaffold: C6. + 46102090 46102111 AGAGCTTCACTGGAGCTTCTTCTTCGGCGTGATCGTCGTCTACGGCGTTAGCCAAGGGCTCGGCAAAGGGCTCAGCAAAGTCAGCACGCAGTACTACTTCAAAGACGAGCAGATGATACAGCCTTCTGAAGCTCAGGTCTACGTTGGTTTGATTCAGGTTCCTTGGATCATTAAACCGGTTTGGGGTCTGTTGACCGATGTTGTACCGGTTCTTGGTTACAG 46101990 46102211 AAAGACGAGCAGATGATACAGC AAAGACGAGCAGATGATACAGC |||||||||||||||||||||| ====================== 22 0 0 0 LS974623|LS974623.2 Brassica rapa genome assembly, chromosome: A07. + 28333006 28333027 AGAGCTTCACTGGAGCTTCTTCTTCGGCGTGATCGTCGTCTACGGCGTAAGCCAAGGGCTGGGCAAAGGTCTCAGCAAAGTCAGCACGCAGTACTACTTCAAAGACGAGCAGATGATACAGCCTTCTGAAGCTCAGGTCTACGTTGGTTTGATTCAGGTTCCTTGGATCATTAAACCGGTTTGGGGTCTGTTGACCGATGTTGTACCGGTTCTTGGTTACAG 28332906 28333127 AAAGACGAGCAGATGATACAGC AAAGACGAGCAGATGATACAGC |||||||||||||||||||||| ====================== 22 0 0 0 FX664472|FX664472.1 TSA: Raphanus sativus var. sativus RNA, contig: WG3_16432. - 1306 1327 CTGTAACCAAGAACCGGTACAACATCGGTCAACAGACCCCAGACCGGTTTGATGATCCAAGGAACCTGAATCAAACCAACGTAAACCTGAGCTTGGGAAGGCTGTATCATCTGCTCGTCTTTGAAGTAGTACTGCGTGCTCACTTTGCTGAGACCTTTGCCGAGACCTTGGCTAACTCCGTAGACGACGATCACGCCGAAGAAGAAGCTCCAGTGAAGCTCT 1206 1427 GCTGTATCATCTGCTCGTCTTT GCTGTATCATCTGCTCGTCTTT |||||||||||||||||||||| ====================== 22 0 0 0 BH685660|BH685660.1 BOMGX02TF BO_2_3_KB Brassica oleracea genomic clone BOMGX02, genomic survey sequence. - 55 76 TAATGGATCCAAGGGAACCTGCAATCAAACCAACGTAGACCTGAGCTTCAGAAGGCTGTATCATCTGCTCGTCTTTGAAGTAGTACTGCGTGCTGACTTTGCTGAGCCCTTTGCCGAGCCCTTGGCTTACGCCGTAGACGACGATCACGCCGAAGAAGAAGCTCCAGTGAAGCTCT 1 176 GCTGTATCATCTGCTCGTCTTT GCTGTATCATCTGCTCGTCTTT |||||||||||||||||||||| ====================== 22 0 0 0 DX036310|DX036310.1 KBrB034L08F KBrB, Brassica rapa BamHI BAC library Brassica rapa subsp. pekinensis genomic clone KBrB034L08, genomic survey sequence. - 470 491 CTGTAACCAAGAACCGGTACAACATCGGTCAACAGACCCCAAACCGGTTTAATGATCCAAGGAACCTGAATCAAACCAACGTAGACCTGAGCTTCAGAAGGCTGTATCATCTGCTCGTCTTTGAAGTAGTACTGCGTGCTGACTTTGCTGAGACCTTTGCCCAGCCCTTGGCTTACGCCGT 370 550 GCTGTATCATCTGCTCGTCTTT GCTGTATCATCTGCTCGTCTTT |||||||||||||||||||||| ====================== 22 0 0 0 ED531274|ED531274.1 KBrB122F22F KBrB, Brassica rapa BamHI BAC library Brassica rapa subsp. pekinensis genomic clone KBrB122F22, genomic survey sequence. - 492 513 CTGTAACCAAGAACCGGTACAACATCGGTCAACAGACCCCAAACCGGTTTAATGATCCAAGGAACCTGAATCAAACCAACGTAGACCTGAGCTTCAGAAGGCTGTATCATCTGCTCGTCTTTGAAGTAGTACTGCGTGCTGACTTTGCTGAGACCTTTGCCCAGCCCTTGGCTTACGCCGTAGACGACGATCACGCCGAAGAAGAAGCTCCAGTGAAGCTCT 392 613 GCTGTATCATCTGCTCGTCTTT GCTGTATCATCTGCTCGTCTTT |||||||||||||||||||||| ====================== 22 0 0 0 AC189312|AC189312.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB034L08, complete sequence. - 479 500 CTGTAACCAAGAACCGGTACAACATCGGTCAACAGACCCCAAACCGGTTTAATGATCCAAGGAACCTGAATCAAACCAACGTAGACCTGAGCTTCAGAAGGCTGTATCATCTGCTCGTCTTTGAAGTAGTACTGCGTGCTGACTTTGCTGAGACCTTTGCCCAGCCCTTGGCTTACGCCGTAGACGACGATCACGCCGAAGAAGAAGCTCCAGTGAAGCTCT 379 600 GCTGTATCATCTGCTCGTCTTT GCTGTATCATCTGCTCGTCTTT |||||||||||||||||||||| ====================== 22 0 0 0 CP123883|CP123883.1 Brassica napus cultivar Xiang5A chromosome 8. - 276803 276824 CTGTAACCAAGAACCGGTACAACATCTGTCAACAGACCCCAAACCGGTTTAATGATCCAAGGAACCTGAATCAAACCAACGTAAACCTGAGCTTCGGAAGGCTGTATCATCTGCTCGTCTTTGAAGTAGTACTGCGTGCTGACTTTGCTGAGACCTTTGCCGAGCCCTTGGCTTACGCCGTAGACGACGATCACGCCGAAGAAGAAGCTCCAGTGAAGCTCT 276703 276924 GCTGTATCATCTGCTCGTCTTT GCTGTATCATCTGCTCGTCTTT |||||||||||||||||||||| ====================== 22 0 0 0 LR778312|LR778312.1 Raphanus sativus genome assembly, chromosome: 3. - 2603335 2603356 CTGTAACCAAGAACCGGTACAACATCGGTCAACAGACCCCAAACCGGTTTGATGATCCAAGGAAACTGAATCAAACCAACGTAAACCTGAGCTTGGGAAGGCTGTATCATCTGCTCGTCTTTGAAGTAGTACTGCGTGCTCACTTTGCTGAGACCTTTGCCGAGACCTTGGCTAACTCCGTAGACGACGATCACGCCGAAGAAGAAGCTCCAGTGAAGCTCT 2603235 2603456 GCTGTATCATCTGCTCGTCTTT GCTGTATCATCTGCTCGTCTTT |||||||||||||||||||||| ====================== 22 0 0 0 OY743206|OY743206.1 Raphanus sativus genome assembly, chromosome: 9. - 541235 541256 CTGTAACCAAGAACCGGTACAACATCGGTCAACAGACCCCAAACCGGTTTGATGATCCAAGGAAACTGAATCAAACCAACGTAAACCTGAGCTTGGGAAGGCTGTATCATCTGCTCGTCTTTGAAGTAGTACTGCGTGCTCACTTTGCTGAGACCTTTGCCGAGACCTTGGCTAACTCCGTAGACGACGATCACGCCGAAGAAGAAGCTCCAGTGAAGCTCT 541135 541356 GCTGTATCATCTGCTCGTCTTT GCTGTATCATCTGCTCGTCTTT |||||||||||||||||||||| ====================== 22 0 0 0