# [ GGGenome | 2025-04-04 07:16:56 ] # database: DDBJ release 134.0 (Mar, 2024) # query: ACGGGATCAAACACAAATCC # count: 7 # query: GGATTTGTGTTTGATCCCGT # count: 21 # name strand start end snippet snippet_pos snippet_end query sbjct align edit match mis del ins CB292008|CB292008.1 UCRCS01_03dc06_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_03dc06, mRNA sequence. + 402 421 TCTCTCTGCAAGCATCTCTTCACCCAAGCAATGAATTTGGGGCACTCAGCCTCAACGCTGAACTTTCCAAATGTCTCATACGAATGGGGCCAACAATAGTACGGGATCAAACACAAATCCACATACCCAAAGTTGTCTCCTCCGAAAAAAGGCTTGTCTCCAAGCTCCCCTTCCAAGGTCTTCAGAACTTCGATGAACTCCTTCTTTGCTGCCTCCTGCT 302 521 ACGGGATCAAACACAAATCC ACGGGATCAAACACAAATCC |||||||||||||||||||| ==================== 20 0 0 0 CX297994|CX297994.1 C06007D12SK FlavCurFr1 Citrus clementina x Citrus tangerina cDNA clone C06007D12, mRNA sequence. + 481 500 TCTCTCTGCAAGCATCTCTTCACCCAAGCAATGAATTTGGGGCACTCAGCCTCAACGCTGAACTTTCCAAATGTCTCATACGAATAAAACCAACAATAGTACGGGATCAAACACAAATCCACATACCCAAAGTTGTCTCCTCCGAAAAAAGGCTTGTCTCCAAGCTCCCCTTCCAAGGTCTTCAGAACTTCGATGAACTCCTTCTTTGCTGCCTCCTGCT 381 600 ACGGGATCAAACACAAATCC ACGGGATCAAACACAAATCC |||||||||||||||||||| ==================== 20 0 0 0 CX299613|CX299613.1 C06024C12SK RindPdig24 Citrus clementina cDNA clone C06024C12, mRNA sequence. + 201 220 TCTCTCTGCAAGCATCTCTTCACCCAAGCAATGAATTTGGGGCACTCAGCCTCAACGCTGAACTTTCCAAATGTCTCATACGAATAAAACCAACAATAGTACGGGATCAAACACAAATCCACATACCCAAAGTTGTCTCCTCCGAAAAAAGGCTTGTCTCCAAGCTCCCCTTCCAAGGTCTTCAGAACTTCGATGAACTCCTTCTTTGCTGCCTCCTGCT 101 320 ACGGGATCAAACACAAATCC ACGGGATCAAACACAAATCC |||||||||||||||||||| ==================== 20 0 0 0 CX637888|CX637888.1 UCRPT02_2E10_t Poncirus trifoliata Roots with Iron Deficiency - UCRPT02-UCR1 Citrus trifoliata cDNA clone UCRPT02-2E10-I19-1-6.t, mRNA sequence. + 414 433 TCTCTCTGCAAGCATCTCTTCACCCAAGCAATGAATTTGGGGCACTCAGCCTCAACGCTGAACTTTCCAAATGTCTCATACGAATAAAACCAACAATAGTACGGGATCAAACACAAATCCACATACCCAAAGTTGTCTCCTCCGAAAAAAGGCTTGTCTCCAAGCTCCCCTTCCAAGGTCTTCAGAACTTCGATGAACTCCTTCTTTGCTGCCTCCTGCT 314 533 ACGGGATCAAACACAAATCC ACGGGATCAAACACAAATCC |||||||||||||||||||| ==================== 20 0 0 0 CX664693|CX664693.1 UCRCP01_011_G09_T7 Swingle citrumelo nematode-challenged root cDNA library - UCRCP01 Citrus x paradisi x Citrus trifoliata cDNA clone UCRCP01_011_T7_G09, mRNA sequence. + 363 382 TCTCTCTGCAAGCATCTCGTCACCCAAGCAATGAATTTGGGGCACTCAGCCTCAACGCTGAACTTTCCAAATGTCTCATACGAATAAAACCAACAATAGTACGGGATCAAACACAAATCCACATACCCAAAGTTGTCTCCTCCGAAAAAAGGCTTGTCTCCAAGCTCCCCTCCCAAGGTCTTCAGAACTTCGATGAACTCCTTCTTTGCTGCCTCCTGCT 263 482 ACGGGATCAAACACAAATCC ACGGGATCAAACACAAATCC |||||||||||||||||||| ==================== 20 0 0 0 CX675754|CX675754.1 UCRCS08_64F02_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-64F02-K4-1-5.g, mRNA sequence. + 479 498 TCTCTCTGCAAGCATCTCGTCACCCAAGCAATGAATTTGGGGCACTCAGCCTCAACGCTGAACTTTCCAAATGTCTCATACGAATAAAACCAACAATAGTACGGGATCAAACACAAATCCACATACCCAAAGTTGTCTCCTCCGAAAAAAAGGCTTGTCTCCAAGCTCCCCTCCCAAGGTCTTCAGAACTTCGATGAACTCCTTCTTTGCTGCCTCCTGC 379 598 ACGGGATCAAACACAAATCC ACGGGATCAAACACAAATCC |||||||||||||||||||| ==================== 20 0 0 0 DC896225|DC896225.1 Citrus unshiu mRNA, clone: PCC0828, 5'-end sequence, expressed in callus. + 390 409 TCTCTCTGCAAGCATCTCGTCACCCAAGCAATGAATTTGGGGCACTCAGCCTCAACGCTGAACTTTCCAAATGTCTCATACGAATAAAACCAACAATAGTACGGGATCAAACACAAATCCACATACCCAAAGTTGTCTCCTCCGAAAAAAGGCTTGTCTCCAAGCTCCCCTCCCAAGGTCTTCAGAACTTCGATGAACTCCTTCTTTGCTGCCTCCTGCT 290 509 ACGGGATCAAACACAAATCC ACGGGATCAAACACAAATCC |||||||||||||||||||| ==================== 20 0 0 0 BQ623411|BQ623411.1 USDA-FP_00502 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00502 5', mRNA sequence. - 414 433 AGCAGGAGGCAGCAAAGAAGGAGTTCATCGAAGTTCTGAAGACCTTGGAAGGGGAGCTTGGAGACAAGCCTTTTTTCGGAGGAGACAACTTTGGGTATGTGGATTTGTGTTTGATCCCGTACTATTGTTGGTTTTATTCGTATGAGACATTTGGAAAGTTCAGCGTTGAGGCTGAGTGCCCCAAATTCATTGCTTGGGTGAAGAGATGCTTGCAGAGAGA 314 533 GGATTTGTGTTTGATCCCGT GGATTTGTGTTTGATCCCGT |||||||||||||||||||| ==================== 20 0 0 0 CB292009|CB292009.1 UCRCS01_03dc06_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_03dc06, mRNA sequence. - 504 523 AGCAGGAGGCAGCAAAGAAGGAGTTCATCGAAGTTCTGAAGACCTTGGAAGGGGAGCTTGGAGACAAGCCTTTTTTCGGAGGAGACAACTTTGGGTATGTGGATTTGTGTTTGATCCCGTACTATTGTTGGTTTTATTCGTATGAGACATTTGGAAAGTTCAGCGTTGAGGCTGAGTGCCCCAAATTCATTGCTTGGGTGAAGAGATGCTTGCAGAGAGA 404 623 GGATTTGTGTTTGATCCCGT GGATTTGTGTTTGATCCCGT |||||||||||||||||||| ==================== 20 0 0 0 CF507260|CF507260.1 USDA-FP_122000-761 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-55_F01 5', mRNA sequence. - 469 488 AGCAGGAGGCAGCAAAGAAGGAGTTCATCGAAGTTCTGAAGACCTTGGGAGGGGAGCTTGGAGACAAGCCTTTTTTCGGAGGAGACAACTTTGGGTATGTGGATTTGTGTTTGATCCCGTACTATTGTTGG 369 499 GGATTTGTGTTTGATCCCGT GGATTTGTGTTTGATCCCGT |||||||||||||||||||| ==================== 20 0 0 0 CK936124|CK936124.1 CGF1004386_E11 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0003_IVF_E11 5', mRNA sequence. - 376 395 AGCAGGAGGCAGCAAAGAAGGAGTTCATCGAAGTTCTGAAGACCTTGGAAGGGGAGCTTGGAGACAAGCCTTTTTTCGGAGGAGACAACTTTGGGTATGTGGATTTGTGTTTGATCCCGTACTATTGTTGGTTTTATTCGTATGAGACATTTGGAAAGTTCAGCGTTGAGGCTGAGTGCCCCAAATTCATTGCTTGGGTGAAGAGATGCTTGCAGAGAGA 276 495 GGATTTGTGTTTGATCCCGT GGATTTGTGTTTGATCCCGT |||||||||||||||||||| ==================== 20 0 0 0 CK938536|CK938536.1 CGF1004441_E07 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650001_IIF_E07 5', mRNA sequence. - 523 542 AGCAGGAGGCAGCAAAGAAGGAGTTCATCGAAGTTCTGAAGACCTTGGAAGGGGAGCTTGGAGACAAGCCTTTTTTCGGAGGAGACAACTTTGGGTATGTGGATTTGTGTTTGATCCCGTACTATTGTTGGTTTTATTCGTATGAGACATTTGGAAAGTTCAGCGTTGAGGCTGAGTGCCCCAAATTCATTGCTTGGGTGAAGAGATGCTTGCAGAGAGA 423 642 GGATTTGTGTTTGATCCCGT GGATTTGTGTTTGATCCCGT |||||||||||||||||||| ==================== 20 0 0 0 CX045585|CX045585.1 UCRCS07_2G10_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-2G10-N20-1-6.g, mRNA sequence. - 393 412 AGCAGGAGGCAGCAAAGAAGGAGTTCATCGAAGTTCTGAAGACCTTGGAAGGGGAGCTTGGAGACAAGCCTTTTTTCGGAGGAGACAACTTTGGGTATGTGGATTTGTGTTTGATCCCGTACTATTGTTGGTTTTATTCGTATGAGACATTTGGAAAGTTCAGCGTTGAGGCTGAGTGCCCCAAATTCATTGCTTGGGTGAAGAGATGCTTGCAGAGAGA 293 512 GGATTTGTGTTTGATCCCGT GGATTTGTGTTTGATCCCGT |||||||||||||||||||| ==================== 20 0 0 0 CX637887|CX637887.1 UCRPT02_2E10_g2 Poncirus trifoliata Roots with Iron Deficiency - UCRPT02-UCR1 Citrus trifoliata cDNA clone UCRPT02-2E10-I19-1-5.g2, mRNA sequence. - 546 565 AGCAGGAGGCAGCAAAGAAGGAGTTCATCGAAGTTCTGAAGACCTTGGAAGGGGAGCTTGGAGACAAGCCTTTTTTCGGAGGAGACAACTTTGGGTATGTGGATTTGTGTTTGATCCCGTACTATTGTTGGTTTTATTCGTATGAGACATTTGGAAAGTTCAGCGTTGAGGCTGAGTGCCCCAAATTCATTGCTTGGGTGAAGAGATGCTTGCAG 446 660 GGATTTGTGTTTGATCCCGT GGATTTGTGTTTGATCCCGT |||||||||||||||||||| ==================== 20 0 0 0 CX664692|CX664692.1 UCRCP01_011_G09_T3 Swingle citrumelo nematode-challenged root cDNA library - UCRCP01 Citrus x paradisi x Citrus trifoliata cDNA clone UCRCP01_011_T3_G09, mRNA sequence. - 497 516 AGCAGGAGGCAGCAAAGAAGGAGTTCATCGAAGTTCTGAAGACCTTGGGAGGGGAGCTTGGAGACAAGCCTTTTTTCGGAGGAGACAACTTTGGGTATGTGGATTTGTGTTTGATCCCGTACTATTGTTGGTTTTATTCGTATGAGACATTTGGAAAGTTCAGCGTTGAGGCTGAGTGCCCCAAATTCATTGCTTGGGTGACGAGATGCTTGCAGAGAGA 397 616 GGATTTGTGTTTGATCCCGT GGATTTGTGTTTGATCCCGT |||||||||||||||||||| ==================== 20 0 0 0 CX675753|CX675753.1 UCRCS08_64F02_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-64F02-K4-1-6.b, mRNA sequence. - 200 219 GCAGGAGGCAGCAAAGAAGGAGTTCATCGAAGTTCTGAAGACCTTGGGAGGGGAGCTTGGAGACAAGCCTTTTTTTCGGAGGAGACAACTTTGGGTATGTGGATTTGTGTTTGATCCCGTACTATTGTTGGTTTTATTCGTATGAGACATTTGGAAAGTTCAGCGTTGAGGCTGAGTGCCCCAAATTCATTGCTTGGGTGACGAGATGCTTGCAGAGAGA 100 319 GGATTTGTGTTTGATCCCGT GGATTTGTGTTTGATCCCGT |||||||||||||||||||| ==================== 20 0 0 0 DY306417|DY306417.1 KN0AAL1DE04FM2 KCl-Salt1 Citrus reshni cDNA 5', mRNA sequence. - 465 484 AGCAGGAGGCAGCAAAGAAGGAGTTCATCGAAGTTCTGAAGACCTTGGAAGGGGAGCTTGGAGACAAGCCTTTTTTCGGAGGAGACAACTTTGGGTATGTGGATTTGTGTTTGATCCCGTACTATTGTTGGTTTTATTCGTATGAGACATTTGGAAAGTTCAGCGTTGAGGCTGAGTGCCCCAAATTCATTGCTTGGGTGAAGAGATGCTTGCAGAGAGA 365 584 GGATTTGTGTTTGATCCCGT GGATTTGTGTTTGATCCCGT |||||||||||||||||||| ==================== 20 0 0 0 EL492565|EL492565.1 C3470 Citrus sinensis flesh cDNA-AFLP Library Citrus sinensis cDNA clone ClC3470, mRNA sequence. - 290 309 AGCAGGAGGCAGCAAAGAAGGAGTTCATCGAAGTTCTGAAGACCTTGGAAGGGGAGCTTGGAGACAAGCCTTTTTTCGGAGGAGACAACTTTGGGTATGTGGATTTGTGTTTGATCCCGTACTATTGTTGGTTTTATTCGTATGAGACATTTGGAAAGTTCAGCGTTGAGGCTGAGTGCCCCAAATTCATTGCTTGGGTGAAGAGATGCTTGCAGAGAGA 190 409 GGATTTGTGTTTGATCCCGT GGATTTGTGTTTGATCCCGT |||||||||||||||||||| ==================== 20 0 0 0 EX449306|EX449306.1 Volcani_8_06_B2 Volcani08 Citrus reticulata x Citrus temple cDNA, mRNA sequence. - 551 570 AGCAGGAGGCAGCAAAGAAGGAGTTCATCGAAGTTCTGAAGACCTTGGAAGGGGAGCTTGGAGACAAGCCTTTTTTCGGAGGAGACAACTTTGGGTATGTGGATTTGTGTTTGATCCCGTACTATTGTTGGTTTTATTCGTATGAGACATTTGGAAAGTTCAGCGTTGAGGCTGAGTGCCCCAAATCCATTGCTTGGGTGAAGAGATGCTTGCAGAGAGA 451 670 GGATTTGTGTTTGATCCCGT GGATTTGTGTTTGATCCCGT |||||||||||||||||||| ==================== 20 0 0 0 EY693643|EY693643.1 CS00-C3-700-016-G12-CT.F Sweet orange fruit, development stadium (1 of 6) Citrus sinensis cDNA, mRNA sequence. - 485 504 AGCAGGAGGCAGCAAAGAAGGAGTTCATCGAAGTTCTGAAGACCTTGGAAGGGGAGCTTGGAGACAAGCCTTTTTTCGGAGGAGACAACTTTGGGTATGTGGATTTGTGTTTGATCCCGTACTATTGGTGGTTTTATTCGTATGAGACATTTGGAAAGTTCAGCGTTGAGGCTGAGTGCCCAAATTCATTGCTTGGGTGAGAGATGCTTGCAGAGAAGAC 385 604 GGATTTGTGTTTGATCCCGT GGATTTGTGTTTGATCCCGT |||||||||||||||||||| ==================== 20 0 0 0 EY726268|EY726268.1 CS00-C3-703-088-E08-CT.F Sweet orange fruit, development stadium (4 of 6) Citrus sinensis cDNA, mRNA sequence. - 516 535 AGCAGGAGGCAGCAAAGAAGGAGTTCATCGAAGTTCTGAAGACCTTGGGAGGGGAGCTTGGAGACAAGCCTTTTTTCGGAGGAGACAACTTTGGGTATGTGGATTTGTGTTTGATCCCGTACTATTGGTGGTTTTATTCGTATGAGACATTTGGAAAGTTCAGCGGTCGAGGCTGACTGCCCCAAATTCCTTGCTTGGGGGACCAAATGGCTGTAAAAGA 416 635 GGATTTGTGTTTGATCCCGT GGATTTGTGTTTGATCCCGT |||||||||||||||||||| ==================== 20 0 0 0 EY795342|EY795342.1 CR05-C3-701-029-B06-CT.F Mandarin fruit, development stadium (2 of 3) Citrus reticulata cDNA, mRNA sequence. - 481 500 AGCAGGAGGCAGCAAAGAAGGAGTTCATCGAAGTTCTGAAGACCTTGGAAGGGGAGCTTGGAGACAAGCCTTTTTTCGGAGGAGACAACTTTGGGTATGTGGATTTGTGTTTGATCCCGTACTATTGTTGGTTTTATTCGTATGAGACATTTGGAAAGTTCAGCGTTGAGGCTGAGTGCCCCAAATTCATTGCTTGGGTGAAGAAATGCTTGCAGAGAGA 381 600 GGATTTGTGTTTGATCCCGT GGATTTGTGTTTGATCCCGT |||||||||||||||||||| ==================== 20 0 0 0 EY889240|EY889240.1 TS27-C2-300-036-B04-CT.F Sunki mandarin bark, greenhouse plant Citrus sunki cDNA, mRNA sequence. - 511 530 GCAAGAGGCAGCAAAGAAGGAGTTCATCGAAGTTCTGAAGACCTTGGAAGGGGAGCTTGGAGACAAGCCTTTTTTCGGAGGAGACAACTTTTGGGTATGTGGATTTGTGTTTGATCCCGTACTATTGTTGGGTTTATTCGTATGAAACATTTGGAAAGTTCACCGTTGAGGCTGAATGCCCCCAATTCTTTGCTTTGGGTGAAAAAAATGCTTTGCAAAA 411 630 GGATTTGTGTTTGATCCCGT GGATTTGTGTTTGATCCCGT |||||||||||||||||||| ==================== 20 0 0 0 EY891226|EY891226.1 TS27-C2-300-047-G08-CT.F Sunki mandarin bark, greenhouse plant Citrus sunki cDNA, mRNA sequence. - 494 513 AGCAGGAGGCAGCAAAGAAGGAGTTCATCGAAGTTCTGAAGACCTTGGAAGGGGAGCTTGGAGACAAGCCTTTTTTCGGAGGAGACAACTTTTGGTATGTGGATTTGTGTTTGATCCCGTACTATTGTTGGTTTTATTCGAATGAGACTTTTGGAAAGTTCACCGTTGAGGCTGAAGGCCCCCAATTCATTGCTGGGGTGAAAAAATGCTTGGCAAAAAA 394 613 GGATTTGTGTTTGATCCCGT GGATTTGTGTTTGATCCCGT |||||||||||||||||||| ==================== 20 0 0 0 FC869467|FC869467.1 C31101G06EF AbioticR1 Citrus reshni cDNA clone C31101G06, mRNA sequence. - 521 540 AGCAGGAGGCAGCAAAGAAGGAGTTCATCGAAGTTCTGAAGACCTTGGAAGGGGAGCTTGGAGACAAGCCTTTTTTCGGAGGAGACAACTTTGGGTATGTGGATTTGTGTTTGATCCCGTACTATTGTTGGTTTTATTCGTATGAGACATTTGGAAAGTTCAGCGTTGAGGCTGAGTGCCCCAAATTCATTGCTTGGGTGAAGAGATGCTTGCAGAGAGA 421 640 GGATTTGTGTTTGATCCCGT GGATTTGTGTTTGATCCCGT |||||||||||||||||||| ==================== 20 0 0 0 FC918821|FC918821.1 KN0AAL1DE04FM2 KCl_Salt1 Citrus reshni cDNA clone KN0AAL1DE04, mRNA sequence. - 463 482 AGCAGGAGGCAGCAAAGAAGGAGTTCATCGAAGTTCTGAAGACCTTGGAAGGGGAGCTTGGAGACAAGCCTTTTTTCGGAGGAGACAACTTTGGGTATGTGGATTTGTGTTTGATCCCGTACTATTGTTGGTTTTATTCGTATGAGACATTTGGAAAGTTCAGCGTTGAGGCTGAGTGCCCCAAATTCATTGCTTGGGTGAAGAGATGCTTGCAGAGAGA 363 582 GGATTTGTGTTTGATCCCGT GGATTTGTGTTTGATCCCGT |||||||||||||||||||| ==================== 20 0 0 0 OY754318|OY754318.1 Citrus sinensis genome assembly, chromosome: 1. - 2463894 2463913 AGCAGGAGGCAGCAAAGAAGGAGTTCATCGAAGTTCTGAAGACCTTGGAAGGGGAGCTTGGAGACAAGCCTTTTTTCGGAGGAGACAACTTTGGGTATGTGGATTTGTGTTTGATCCCGTACTATTGTTGGTTTTATTCGTATGAGACATTTGGAAAGTTCAGCGTTGAGGCTGAGTGCCCCAAATTCATTGCTTGGGTGAAGAGATGCTTGCAGAGAGA 2463794 2464013 GGATTTGTGTTTGATCCCGT GGATTTGTGTTTGATCCCGT |||||||||||||||||||| ==================== 20 0 0 0 OY754318|OY754318.1 Citrus sinensis genome assembly, chromosome: 1. - 52135289 52135308 AGCAGGAGGCAGCAAAGAAGGAGTTCATCGAAGTTCTGAAGACCTTGGGAGGGGAGCTTGGAGACAAGCCTTTTTTCGGAGGAGACAACTTTGGGTATGTGGATTTGTGTTTGATCCCGTACTATTGTTGGTTTTATTCGTATGAGACATTTGGAAAGTTCAGCGTTGAGGCTGAGTGCCCCAAATTCATTGCTTGGGTGACGAGATGCTTGCAGAGAGA 52135189 52135408 GGATTTGTGTTTGATCCCGT GGATTTGTGTTTGATCCCGT |||||||||||||||||||| ==================== 20 0 0 0