# [ GGGenome | 2025-04-08 07:14:47 ] # database: DDBJ release 134.0 (Mar, 2024) # query: CGCAGATGTGGCAACTAGAA # count: 14 # query: TTCTAGTTGCCACATCTGCG # count: 5 # name strand start end snippet snippet_pos snippet_end query sbjct align edit match mis del ins EX061888|EX061888.1 BR046532 salt-treated whole plant cDNA library KBLS Brassica rapa subsp. pekinensis cDNA clone KBLS-104B05 5', mRNA sequence. + 213 232 GAATCTGTGCTTCAAGCTGCTGGTATTGAGCTTGGATCAAACTACCCTCGACCAATTGTTGGACTAGATGAAGCCAAAGCACGCCTTCATGAGGCACTCTCGCAGATGTGGCAACTAGAAGCTGCCTCAAGAGCTGCAATAGAGAACGGATCCGAAGAAGGACTTGGCGATTCTACCGAGTTTGTTGAAGCTCCTATCGAGTTCCCTAGAGACATCACAA 113 332 CGCAGATGTGGCAACTAGAA CGCAGATGTGGCAACTAGAA |||||||||||||||||||| ==================== 20 0 0 0 EX099707|EX099707.1 BR085997 root cDNA library KFRT Brassica rapa subsp. pekinensis cDNA clone KFRT-021E11 5', mRNA sequence. + 651 670 GAATCTGTGCTTCAAGCTGCTGGTATTGAGCTTGGATCAAACTACCCTCGACCAATTGTTGGACTAGATGAAGCCAAAGCACGCCTTCATGAGGCACTCTCGCAGATGTGGCAACTAGAAGCTGCCTCAAGAGCTGCAATAGAGAACGGATCCGAAGAAGGACTTGGCGATTCTACCGAGTTTGTTGAAGCTCCTATCGAGTTCCCTAGAGACATCACAA 551 770 CGCAGATGTGGCAACTAGAA CGCAGATGTGGCAACTAGAA |||||||||||||||||||| ==================== 20 0 0 0 EX762864|EX762864.1 RR3BW85TF RR3(NY) Raphanus raphanistrum subsp. raphanistrum cDNA 5', mRNA sequence. + 572 591 GAGTCCGTGCTTCAAGCTGCTGGTATTGAGCTCGGATCAAACTATCCTCGACCAATTGTTGGATTAGATGAAGCGAAAGCACGGCTTCACGAAGCGCTTTCGCAGATGTGGCAACTAGAAGCTGCCGCAAGAGCTGCGATAGAGAACGGATCGGAGGAAGGGCTTGGAGATTCTACTGAGTTTGAGGAGCTCCTATCGAGTTCCCTAGAGACATCACGAT 472 691 CGCAGATGTGGCAACTAGAA CGCAGATGTGGCAACTAGAA |||||||||||||||||||| ==================== 20 0 0 0 EY921510|EY921510.1 RR4D502TF RR4(PB) Raphanus raphanistrum subsp. landra cDNA 5', mRNA sequence. + 180 199 GAGTCCGTGCTTCAAGCTGCTGGTATTGAGCTCGGATCAAACTATCCTCTACCAATTGTTGGATTAGATGAAGCGAAAGCACGGCTTCACGAAGCGCTTTCGCAGATGTGGCAACTAGAAGCTGCCGCAAGAGCTGCGATAGAGAACGGATCGGAGGAAGGGCTTGGAGATTCTACTGAGTTTGAGGAAGCTCCTATCGAGTTCCCTAGAGACATCACGA 80 299 CGCAGATGTGGCAACTAGAA CGCAGATGTGGCAACTAGAA |||||||||||||||||||| ==================== 20 0 0 0 EY929774|EY929774.1 RS1D330TF RS1(AR) Raphanus sativus var. oleiformis cDNA 5', mRNA sequence. + 422 441 GAGTCCGTGCTTCAAGCTGCTGGTATTGAGCTCGGATCAAACTATCCTCGACCAATTGTTGGATTAGATGAAGCGAAAGCACGGCTTCATGAAGCGCTTTCGCAGATGTGGCAACTAGAAGCTGCCTCTAGAGCTGCGATAGAGAACGGATCCGAGGAAGGACTTGGAGACTCTACTGAGTTTGAGGAAGCTCCTATCGAGTTCCCTAGAGACATCACAA 322 541 CGCAGATGTGGCAACTAGAA CGCAGATGTGGCAACTAGAA |||||||||||||||||||| ==================== 20 0 0 0 EY941369|EY941369.1 RS2EH47TF RS2(RS) Raphanus sativus cDNA 5', mRNA sequence. + 265 284 GAGTCCGTGCTTCAAGCTGCTGGTATTGAGCTCGGATCAAACTATCCTCGACCAATTGTTGGATTAGATGAAGCGAAAGCACGGCTTCACGAAGCGCTTTCGCAGATGTGGCAACTAGAAGCTGCCTCGAGAACTGCGATTGAGAATGGATCCGAGGAAGGGCTTGGAGATTCTACTGAGTTTGAGGAAGCTCCTATCGAGTTCCCTAGAGACATCACGA 165 384 CGCAGATGTGGCAACTAGAA CGCAGATGTGGCAACTAGAA |||||||||||||||||||| ==================== 20 0 0 0 KG049608|KG049608.1 CAP019E18.F CAP Capsella rubella genomic 5', genomic survey sequence. + 363 382 GAGTCCGTGCTTCAAGCTGCTGGAATCGAGCTTGGATCAAACTATCCTCGCCCAATTGTAGGATTAGATGAAGCAAAAGCACGACTTCATGAAGCGCTTTCGCAGATGTGGCAACTAGAAGCTGCTTCAAGAGCTGCAATAGAGAACGGATCTGAAGAAGGACTTGGAGATTCTGCTGAGGTGGAGGAAGCTCCTATTGACTTTCCCAGGGACATCACAA 263 482 CGCAGATGTGGCAACTAGAA CGCAGATGTGGCAACTAGAA |||||||||||||||||||| ==================== 20 0 0 0 AJ344565|AJ344565.1 Brassica napus cry1 gene for cryptochrome 1. + 2859 2878 GAATCTGTGCTTCAAGCTGCTGGTATTGAGCTTGGATCAAACTACCCTCGACCAATTGTTGGACTAGATGAAGCCAAAGCACGCCTTCATGAGGCACTCTCGCAGATGTGGCAACTAGAAGCTGCCTCAAGAGCTGCAATAGAGAACGGATCCGAAGAAGGACTTGGCGATTCTACCGAGTTTGTTGAAGCTCCTATCGAGTTCCCTAGAGACATCACGA 2759 2978 CGCAGATGTGGCAACTAGAA CGCAGATGTGGCAACTAGAA |||||||||||||||||||| ==================== 20 0 0 0 AJ704628|AJ704628.1 Brassica napus mRNA for cryptochrome1 (cry1 gene). + 1515 1534 GAATCTGTGCTTCAAGCTGCTGGTATTGAGCTTGGATCAAACTACCCTCGACCAATTGTTGGACTAGATGAAGCCAAAGCACGCCTTCATGAGGCACTCTCGCAGATGTGGCAACTAGAAGCTGCCTCAAGAGCTGCAATAGAGAACGGATCCGAAGAAGGACTTGGCGATTCTACCGAGTTTGTTGAAGCTCCTATCGAGTTCCCTAGAGACATCACGA 1415 1634 CGCAGATGTGGCAACTAGAA CGCAGATGTGGCAACTAGAA |||||||||||||||||||| ==================== 20 0 0 0 CP144188|CP144188.1 Capsella bursa-pastoris isolate WGS_leaf chromosome 6. + 21594326 21594345 GAGTCCGTGCTTCAAGCTGCTGGAATCGAGCTTGGATCAAACTATCCTCGCCCAATTGTAGGATTAGATGAAGCAAAAGCACGGCTTCATGAAGCGCTTTCGCAGATGTGGCAACTAGAAGCTGCTTCAAGAGCTGCAATAGAGAACGGATCCGAAGAAGGACTTGGAGATTCTGCTGAGGTGGAGGAAGCTCCTATTGACTTTCCCAGGGACATCACAA 21594226 21594445 CGCAGATGTGGCAACTAGAA CGCAGATGTGGCAACTAGAA |||||||||||||||||||| ==================== 20 0 0 0 DQ859033|DQ859033.1 Brassica rapa cryptochrome 1 protein (cry1) mRNA, complete cds. + 1550 1569 GAATCTGTGCTTCAAGCTGCTGGTATTGAGCTTGGATCAAACTACCCTCGACCAATTGTTGGACTAGATGAAGCAAAAGCACGCCTTCATGAGGCCCTCTCGCAGATGTGGCAACTAGAAGCTGCCTCAAGAGCTGCAATAGAGAACGGATCCGAAGAAGGACTTGGCGATTCTACCGAGTTTGTTGAAGCTCCTATCGAGTTCCCTAGAGACATCACGA 1450 1669 CGCAGATGTGGCAACTAGAA CGCAGATGTGGCAACTAGAA |||||||||||||||||||| ==================== 20 0 0 0 GQ251563|GQ251563.1 Capsella bursa-pastoris isolate US721 clone L2 cryptochrome 1 (CRY1) mRNA, partial cds. + 1475 1494 GAGTCCGTGCTTCAAGCTGCTGGAATCGAGCTTGGATCAAACTATCCTCGCCCAATTGTAGGATTAGATGAAGCAAAAGCACGACTTCATGAAGCGCTTTCGCAGATGTGGCAACTAGAAGCTGCTTCAAGAGCTGCAATAGAGAACGGATCCGAAGAAGGACTTGGAGATTCTGCTGAGGTGGAGGAAGCTCCTATTGACTTTCCCAGGGACATCACAA 1375 1594 CGCAGATGTGGCAACTAGAA CGCAGATGTGGCAACTAGAA |||||||||||||||||||| ==================== 20 0 0 0 GQ251564|GQ251564.1 Capsella bursa-pastoris isolate US740 clone L2 cryptochrome 1 (CRY1) mRNA, partial cds. + 1475 1494 GAGTCCGTGCTTCAAGCTGCTGGAATCGAGCTTGGATCAAACTATCCTCGCCCAATTGTAGGATTAGATGAAGCAAAAGCACGACTTCATGAAGCGCTTTCGCAGATGTGGCAACTAGAAGCTGCTTCAAGAGCTGCAATAGAGAACGGATCTGAAGAAGGACTTGGAGATTCTGCTGAGGTGGAGGAAGCTCCTATTGACTTTCCCAGGGACATCACAA 1375 1594 CGCAGATGTGGCAACTAGAA CGCAGATGTGGCAACTAGAA |||||||||||||||||||| ==================== 20 0 0 0 MG432487|MG432487.1 Brassica rapa subsp. pekinensis cultivar Chiifu cryptochrome 1 (CRY1) mRNA, complete cds. + 1460 1479 GAATCTGTGCTTCAAGCTGCTGGTATTGAGCTTGGATCAAACTACCCTCGACCAATTGTTGGACTAGATGAAGCCAAAGCACGCCTTCATGAGGCACTCTCGCAGATGTGGCAACTAGAAGCTGCCTCAAGAGCTGCAATAGAGAACGGATCCGAAGAAGGACTTGGCGATTCTACCGAGTTTGTTGAAGCTCCTATCGAGTTCCCTAGAGACATCACAA 1360 1579 CGCAGATGTGGCAACTAGAA CGCAGATGTGGCAACTAGAA |||||||||||||||||||| ==================== 20 0 0 0 EX767040|EX767040.1 RR3BW85JQ RR3(NY) Raphanus raphanistrum subsp. raphanistrum cDNA 3', mRNA sequence. - 821 840 TCGTGATGTCTCTAGGGAACTCGATAGGAGCTTCCTCAAACTCAGTAGAATCTCCAAGCCCTTCCTCCGATCCGTTCTCTATCGCAGCTCTTGCGGCAGCTTCTAGTTGCCACATCTGCGAAGCGCTTCGTGAAGCCGTGCTTT 721 864 TTCTAGTTGCCACATCTGCG TTCTAGTTGCCACATCTGCG |||||||||||||||||||| ==================== 20 0 0 0 FX693791|FX693791.1 TSA: Brassica rapa subsp. pekinensis RNA, contig: CF3_6094. - 838 857 TTGTGATGTCTCTAGGGAACTCGATAGGAGCTTCAACAAACTCGGTAGAATCGCCAAGTCCTTCTTCGGATCCGTTCTCTATTGCAGCTCTTGAGGCAGCTTCTAGTTGCCACATCTGCGAGAGTGCCTCATGAAGGCGTGCTTTGGCTTCATCTAGTCCAACAATTGGTCGAGGGTAGTTTGATCCAAGCTCAATACCAGCAGCTTGAAGCACAGATTC 738 957 TTCTAGTTGCCACATCTGCG TTCTAGTTGCCACATCTGCG |||||||||||||||||||| ==================== 20 0 0 0 CP123879|CP123879.1 Brassica napus cultivar Xiang5A chromosome 4. - 20461273 20461292 TCGTGATGTCTCTAGGGAACTCGATAGGAGCTTCAACAAACTCGGTAGAATCGCCAAGTCCTTCTTCGGATCCGTTCTCTATTGCAGCTCTTGAGGCAGCTTCTAGTTGCCACATCTGCGAGAGTGCCTCATGAAGGCGTGCTTTGGCTTCATCTAGTCCAACAATTGGTCGAGGGTAGTTTGATCCAAGCTCAATACCAGCAGCTTGAAGCACAGATTC 20461173 20461392 TTCTAGTTGCCACATCTGCG TTCTAGTTGCCACATCTGCG |||||||||||||||||||| ==================== 20 0 0 0 HG994363|HG994363.1 Brassica napus genome assembly, chromosome: A09. - 19860111 19860130 TCGTGATGTCTCTAGGGAACTCGATAGGAGCTTCAACAAACTCGGTAGAATCGCCAAGTCCTTCTTCGGATCCGTTCTCTATTGCAGCTCTTGAGGCAGCTTCTAGTTGCCACATCTGCGAGAGTGCCTCATGAAGGCGTGCTTTGGCTTCATCTAGTCCAACAATTGGTCGAGGGTAGTTTGATCCAAGCTCAATACCAGCAGCTTGAAGCACAGATTC 19860011 19860230 TTCTAGTTGCCACATCTGCG TTCTAGTTGCCACATCTGCG |||||||||||||||||||| ==================== 20 0 0 0 OU466862|OU466862.2 Thlaspi arvense genome assembly, chromosome: 6. - 44498179 44498198 TTGTGATGTCCCTTGGAAACTCTATAGGAGCTTCCTCCAACTCAGTAGAATCTCCAAGTCCTTCTTCTGATCCATTCTCTACTGCAGCTCTTGAAGCAGCTTCTAGTTGCCACATCTGCGAAAGAGCTTCATGAAGCCGTGATTTAGCTTCATCTAGTCCTACTATAGGTCGAGGATAGTTAGATCCAAGCTCAATACCAGCAGCTTGAAGCACTGATTC 44498079 44498298 TTCTAGTTGCCACATCTGCG TTCTAGTTGCCACATCTGCG |||||||||||||||||||| ==================== 20 0 0 0