# [ GGGenome | 2025-04-08 18:27:21 ] # database: DDBJ release 134.0 (Mar, 2024) # query: CGGGCGTAAGAGGGATTTTGC # count: 5 # query: GCAAAATCCCTCTTACGCCCG # count: 25 # name strand start end snippet snippet_pos snippet_end query sbjct align edit match mis del ins CB290985|CB290985.1 UCRCS01_02ag06_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_02ag06, mRNA sequence. + 138 158 TTTTCCTTTTTGGTTCCACTTTGAATCCGTTTCAACTATATATGCTTCTAAACTTTGATGGTAAATGGTCCGTTTAAGCCTTACTGGGATATATTCTTGACGGGCGTAAGAGGGATTTTGCATATGCCATTGGGAGGGCAGCTATCTTCTTGGGTTTACTCACATAAGCTCTCTTTGGGAAGTTGGTGTAATCATTGGCCTCAATCTCATCCAGTATTTGC 38 258 CGGGCGTAAGAGGGATTTTGC CGGGCGTAAGAGGGATTTTGC ||||||||||||||||||||| ===================== 21 0 0 0 CB304717|CB304717.1 FLAVEDO0002_IIIaR_H04 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IIIaR_H04 3', mRNA sequence. + 244 264 TTTTCATTTTTTTTTCCACTTTGAATCCGTTTCAACTATATATGCTTCTAAACTTTGATGTTAAATGTTCAGTTTAAGCCTTACTGGTATATATTCTTGACGGGCGTAAGAGGGATTTTGCATATGCAATTGGTAGTGCAGCTATCTTCTTGGCTTTACTCACATAAGCTCTCTTTGTGAAGTTGTTGTAATCATTGGCCTCAATCTCATCCAGTATTTGC 144 364 CGGGCGTAAGAGGGATTTTGC CGGGCGTAAGAGGGATTTTGC ||||||||||||||||||||| ===================== 21 0 0 0 CB305043|CB305043.1 FLAVEDO0003_IVaR_C09 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IVaR_C09 3', mRNA sequence. + 146 166 TTTTCATGTTTGTTTCCACTTTGAATCCGTTTCAACTATATATGCTTCTAAACTTTGATGTTAAATGTTCAGTTTAAGCCTTACTGGTATATATTCTTGACGGGCGTAAGAGGGATTTTGCATATGCAATTGGTAGTGCAGCTATCTTCTTGGCTTTACTCACATAAGCTCTCTTTGTGAAGTTGTTGTAATCATTGGCCTCAATCTCATCCAGTATTTGC 46 266 CGGGCGTAAGAGGGATTTTGC CGGGCGTAAGAGGGATTTTGC ||||||||||||||||||||| ===================== 21 0 0 0 CN184332|CN184332.1 UCRCS04_0005F10_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0005F10, mRNA sequence. + 189 209 TTTTCATTTTTGTTTCCACTTTGAATCCGTTTCAACTATATATGCTTCTAAACTTTGATGTTAAATGTTCAGTTTAAGCCTTACTGGTATATATTCTTGACGGGCGTAAGAGGGATTTTGCATATGCAATTGGTAGTGCAGCTATCTTCTTGGCTTTACTCACATAAGCTCTCTTTGTGAAGTTGTTGTAATCATTGGCCTCAATCTCATCCAGTATTTGC 89 309 CGGGCGTAAGAGGGATTTTGC CGGGCGTAAGAGGGATTTTGC ||||||||||||||||||||| ===================== 21 0 0 0 EB684762|EB684762.1 CP-17_D06_047.f1 Citrus paradisi young grapefruit leaf cDNA library Citrus x paradisi cDNA clone CP-17_D06_047 3', mRNA sequence. + 183 203 TTTTCATTTTTGTTTCCACTTTGAATCCGTTTCAACTATATATGCTTCTAAACTTTGATGTTAAATGTTCAGTTTAAGCCTTACTGGTATATATTCTTGACGGGCGTAAGAGGGATTTTGCATATGCAATTGGTAGTGCAGCTATCTTCTTGGCTTTACTCACATAAGCTCTCTTTGTGAAGTTGTTGTAATCATTGGCCTCAATCTCATCCAGTATTTGC 83 303 CGGGCGTAAGAGGGATTTTGC CGGGCGTAAGAGGGATTTTGC ||||||||||||||||||||| ===================== 21 0 0 0 PA551512|PA551512.1 JP 2022104707-A/1: Determining methods of carotenoid content in citrus fruits. - 4837 4857 GCAAATACTGGATGAGATTGAGGCCAATGATTACAACAACTTCACAAAGAGAGCTTATGTGAGTAAAGCCAAGAAGATAGCTGCACTACCAATTGCATATGCAAAATCCCTCTTACGCCCGTCGAGAATATATACCAGTAAGGCTTAAACTGAACATTTAACATCAAAGTTTAGAAGCATATATAGTTGAAACGGATTCAAAGTGGAAACAAAAATGAAAA 4737 4957 GCAAAATCCCTCTTACGCCCG GCAAAATCCCTCTTACGCCCG ||||||||||||||||||||| ===================== 21 0 0 0 CB290986|CB290986.1 UCRCS01_02ag06_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_02ag06, mRNA sequence. - 407 427 GCAAATACTGGATGAGATTGAGGCCAATGATTACAACAACTTCACAAAGAGAGCTTATGTGAGTAAAGCCAAGAAGATAGCTGCACTACCAATTGCATATGCAAAATCCCTCTTACGCCCGTCAAGAATATATACCAGTAAGGCTTAAACTGAACATTTAACATCAAAGTTTAGAAGCATATATAGTTGAAACGGATTCAAAGTGGAAACAAAAATGAAAA 307 527 GCAAAATCCCTCTTACGCCCG GCAAAATCCCTCTTACGCCCG ||||||||||||||||||||| ===================== 21 0 0 0 CN184333|CN184333.1 UCRCS04_0005F10_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0005F10, mRNA sequence. - 206 226 GCAAATACTGGATGAGATTGAGGCCAATGATTACAACAACTTCACAAAGAGAGCTTATGTGAGTAAAGCCAAGAAGATAGCTGCACTACCAATTGCATATGCAAAATCCCTCTTACGCCCGTCAAGAATATATACCAGTAAGGCTTAAACTGAACATTTAACATCAAAGTTTAGAAGCATATATAGTTGAAACGGATTCAAAGTGGAAACAAAAATGAAAA 106 326 GCAAAATCCCTCTTACGCCCG GCAAAATCCCTCTTACGCCCG ||||||||||||||||||||| ===================== 21 0 0 0 CX289036|CX289036.1 C02008D02SK IF1 Citrus clementina cDNA clone C02008D02, mRNA sequence. - 78 98 CCAATGATTACAACAACTTCACAAAGAGAGCTTATGTGAGTAAAGCCAAGAAGATAGCTGCACTACCAATTGCATATGCAAAATCCCTCTTACGCCCGTCAAGAATATATACCAGTAAGGCTTAAACTGAACATTTAACATCAAAGTTTAGAAGCATATATAGTTGAAACGGATTCAAAGTGGAAAAAAAAATGAAAA 1 198 GCAAAATCCCTCTTACGCCCG GCAAAATCCCTCTTACGCCCG ||||||||||||||||||||| ===================== 21 0 0 0 DC886676|DC886676.1 Citrus nobilis x Citrus kinokuni mRNA, clone: EGJ_0280, 5'-end sequence, expressed in ovule. - 29 49 GAAGATAGCTGCACTACCAATTGCATATGCAAAATCCCTCTTACGCCCGTCGAGAATATATACCAGTAAGGCTTAAACTGAACATTTAACATCAAAGTTTAGAAGCATATATAGTTGAAACGGATTCAAAGTGGAAACAAAAATGAAAA 1 149 GCAAAATCCCTCTTACGCCCG GCAAAATCCCTCTTACGCCCG ||||||||||||||||||||| ===================== 21 0 0 0 DC891755|DC891755.1 Citrus limon mRNA, clone: LLL0487, 5'-end sequence, expressed in leaf. - 208 228 GCAAATACTGGATGAGATTGAGGCCAATGATTACAACAACTTCACAAAGAGAGCTTATGTGAGTAAAGCCAAGAAGATAGCTGCACTACCAATTGCATATGCAAAATCCCTCTTACGCCCGTCAAGAATATATACCAGTAAGGCTTAAACTGAACATTTATCATCAAAGTTTAGAAGCATATATAGTTGAAACGGATTCAAAGTGGAAACAAAAATGAAAA 108 328 GCAAAATCCCTCTTACGCCCG GCAAAATCCCTCTTACGCCCG ||||||||||||||||||||| ===================== 21 0 0 0 DC898135|DC898135.1 Citrus unshiu mRNA, clone: STG0097, 5'-end sequence, expressed in style. - 81 101 AGGCCAATGATTACAACAACTTCACAAAGAGAGCTTATGTGAGTAAAGCCAAGAAGATAGCTGCACTACCAATTGCATATGCAAAATCCCTCTTACGCCCGTCAAGAATATATACCAGTAAGGCTTAAACTGAACATTTAACATCAAAGTTTAGAAGCATATATAGTTGAAACGGATTCAAAGTGGAAAAAAAATGAAAAT 1 201 GCAAAATCCCTCTTACGCCCG GCAAAATCCCTCTTACGCCCG ||||||||||||||||||||| ===================== 21 0 0 0 DY257357|DY257357.1 KN0AAK2AF06FM1 AbsCFruit Citrus sinensis cDNA 5', mRNA sequence. - 790 810 GCAAATACTGGATGAGATTGAGGCCAATGATTACAACAACTTCACAAAGAGAGCTTATGTGAGTAAAGCCAAGAAGATAGCTGCACTACCCATTGCATATGCAAAATCCCTCTTACGCCCGTCAAGAATATATACCAGTAAGGGCTTAAACTGAACCTTTAACATCCAAGTTTAGAAGCATATTTTAGTTGAAACGGATTCCAAGGGGAAACCAAAATGGA 690 910 GCAAAATCCCTCTTACGCCCG GCAAAATCCCTCTTACGCCCG ||||||||||||||||||||| ===================== 21 0 0 0 EH406409|EH406409.1 KN0AAK1AH09FM2 AbsCFruit Citrus sinensis cDNA 5', mRNA sequence. - 228 248 GCAAATACTGGATGAGATTGAGGCCAATGATTACAACAACTTCACAAAGAGAGCTTATGTGAGTAAAGCCAAGAAGATAGCTGCACTACCAATTGCATATGCAAAATCCCTCTTACGCCCGTCAAGAATATATACCAGTAAGGCTTAAACTGAACATTTAACATCAAAGTTTAGAAGCATATATAGTTGAAACGGATTCAAAGTGGAAACAAAAATGAAAA 128 348 GCAAAATCCCTCTTACGCCCG GCAAAATCCCTCTTACGCCCG ||||||||||||||||||||| ===================== 21 0 0 0 EY754846|EY754846.1 CS12-C1-001-020-H03-CT.F Sweet orange leaf, field plant A Citrus sinensis cDNA, mRNA sequence. - 541 561 GCAAATACTGGATGAGATTGAGGCCAATGATTACAACAACTTCACAAAGAGAGCTTATGTGAGTAAAGCCAAGAAGATAGCTGCACTACCAATTGCATATGCAAAATCCCTCTTACGCCCGTCAAGAATATATACCAGTAAGGCTTAAACTGAACATTTAACATCAAAGTTTAGAAGCATATATAGTTGAAACGGATTCAAAGTGGAAACAAANNANAAAA 441 661 GCAAAATCCCTCTTACGCCCG GCAAAATCCCTCTTACGCCCG ||||||||||||||||||||| ===================== 21 0 0 0 EY765656|EY765656.1 CR05-C1-100-087-H02-CT.F Mandarin leaf, greenhouse plant Citrus reticulata cDNA, mRNA sequence. - 462 482 GCAAATACTGGATGAGATTGAGGCCAATGATTACAACAACTTCACAAAGAGAGCTTATGTGAGTAAAGCCAAGAAGATAGCTGCACTACCAATTGCATATGCAAAATCCCTCTTACGCCCGTCGAGAATATATACCAGTAAGGCTTAAACTGAACATTTAACATCAAAGTTTAGAAGCATATATAGTTGAAACGGATTCAAAGTGGAAACAAAAATGAAAA 362 582 GCAAAATCCCTCTTACGCCCG GCAAAATCCCTCTTACGCCCG ||||||||||||||||||||| ===================== 21 0 0 0 EY807490|EY807490.1 CR05-C3-702-084-B07-CT.F Mandarin fruit, development stadium (3 of 3) Citrus reticulata cDNA, mRNA sequence. - 444 464 GCAAATACTGGATGAGATTGAGGCCAATGATTACAACAACTTCACAAAGAGAGCTTATGTGAGTAAAGCCAAGAAGATAGCTGCACTACCAATTGCATATGCAAAATCCCTCTTACGCCCGTCAAGAATATATACCAGTAAGGCTTAAACTGAACATTTAACATCAAAGTTTAGAAGCATATATAGTTGAAACGGATTCAAAGTGGAAAAAAAAATGAAAA 344 564 GCAAAATCCCTCTTACGCCCG GCAAAATCCCTCTTACGCCCG ||||||||||||||||||||| ===================== 21 0 0 0 EY849673|EY849673.1 CA26-C1-002-090-D10-CT.F Sour orange leaf, field plant Citrus aurantium cDNA, mRNA sequence. - 340 360 GCAAATACTGGATGAGATTGAGGCCAATGATTACAACAACTTCACAAAGAGAGCTTATGTGAGTAAAGCCAAGAAGATAGCTGCACTACCAATTGCATATGCAAAATCCCTCTTACGCCCGTCAAGAATATATACCAGTAAGGCTTAAACTGAACATTTAACATCAAAGTTTAGAAGCATATATAGTTGAAACGGATTCAAAGTGGAAAAAAAAATGAAAA 240 460 GCAAAATCCCTCTTACGCCCG GCAAAATCCCTCTTACGCCCG ||||||||||||||||||||| ===================== 21 0 0 0 EY854447|EY854447.1 CG32-C1-003-048-D11-CT.F Mexican lime leaf, greenhouse plant Citrus aurantiifolia cDNA, mRNA sequence. - 644 664 GCAAATACTGGATGAGATTGAGGCCAATGATTACAACAACTTCACAAAGAGAGCTTATGTGAGTAAAGCCAAGAAGATACCTGCACTACCAATTGCATATGCAAAATCCCTCTTACGCCCGTCAAGAATATATACCAGTAAAGGCTTAAACTGAACTTTTATCATCAAAGTTTAAAACCATATATAGTTGAAACGGGATTCAAAGTGGGAAACAAAAATGA 544 764 GCAAAATCCCTCTTACGCCCG GCAAAATCCCTCTTACGCCCG ||||||||||||||||||||| ===================== 21 0 0 0 FC871526|FC871526.1 KN0AAK1AH09FM2 AbsCFruit1 Citrus sinensis cDNA clone KN0AAK1AH09, mRNA sequence. - 228 248 GCAAATACTGGATGAGATTGAGGCCAATGATTACAACAACTTCACAAAGAGAGCTTATGTGAGTAAAGCCAAGAAGATAGCTGCACTACCAATTGCATATGCAAAATCCCTCTTACGCCCGTCAAGAATATATACCAGTAAGGCTTAAACTGAACATTTAACATCAAAGTTTAGAAGCATATATAGTTGAAACGGATTCAAAGTGGAAACAAAAATGAAAA 128 348 GCAAAATCCCTCTTACGCCCG GCAAAATCCCTCTTACGCCCG ||||||||||||||||||||| ===================== 21 0 0 0 FC923772|FC923772.1 C31708G06EF StrClemenN Citrus clementina cDNA clone C31708G06, mRNA sequence. - 538 558 GCAAATACTGGATGAGATTGAGGCCAATGATTACAACAACTTCACAAAGAGAGCTTATGTGAGTAAAGCCAAGAAGATAGCTGCACTACCAATTGCATATGCAAAATCCCTCTTACGCCCGTCAAGAATATATACCAGTAAGGCTTAAACTGAACATTTAACATCAAAGTTTAGAAGCATATATAGTTGAAAACGGATTCAAGTGGAAAAAAAAATGAAAA 438 658 GCAAAATCCCTCTTACGCCCG GCAAAATCCCTCTTACGCCCG ||||||||||||||||||||| ===================== 21 0 0 0 GO241866|GO241866.1 514 'Cara cara' navel orange fruit cDNA library Citrus sinensis cDNA clone 651 5', mRNA sequence. - 365 385 GCAAATACTGGATGAGATTGAGGCCAATGATTACAACAACTTCACAAAGAGAGCTTATGTGAGTAAAGCCAAGAAGATAGCTGCACTACCAATTGCATATGCAAAATCCCTCTTACGCCCGTCAAGAATATATACCAGTAAGGCTTAAACTGAACATTTAACATCAAAGTTTAGAAGCATATATAGTTGAAACGGATTCAAAGTGGAAACAAAAATGAAAA 265 485 GCAAAATCCCTCTTACGCCCG GCAAAATCCCTCTTACGCCCG ||||||||||||||||||||| ===================== 21 0 0 0 AB037975|AB037975.1 Citrus unshiu mRNA for phytoene synthase, complete cds. - 1442 1462 GCAAATACTGGATGAGATTGAGGCCAATGATTACAACAACTTCACAAAGAGAGCTTATGTGAGTAAAGCCAAGAAGATAGCTGCACTACCAATTGCATATGCAAAATCCCTCTTACGCCCGTCAAGAATATATACCAGTAAGGCTTAAACTGAACATTTAACATCAAAGTTTAGAAGCATATATAGTTGAAACGGATTCAAAGTGGAAAAAAAATGAAAAT 1342 1562 GCAAAATCCCTCTTACGCCCG GCAAAATCCCTCTTACGCCCG ||||||||||||||||||||| ===================== 21 0 0 0 AF152892|AF152892.2 Citrus x paradisi phytoene synthase mRNA, complete cds. - 1514 1534 GCAAATACTGGATGAGATTGAGGCCAATGATTACAACAACTTCACAAAGAGAGCTTGTGTGAGTAAAGCCAAGAAGATAGCTGCACTACCAATTGCATATGCAAAATCCCTCTTACGCCCGTCAAGAATATATACCAGTAAGGCTTAAACTGAACATTTAACATCAAAGTTTAGAAGCATATATAGTTGAAACGGATTCAAAGTGGAAAAAAAAATGAAAA 1414 1634 GCAAAATCCCTCTTACGCCCG GCAAAATCCCTCTTACGCCCG ||||||||||||||||||||| ===================== 21 0 0 0 AF220218|AF220218.1 Citrus unshiu phytoene synthase (Psy1) mRNA, complete cds. - 1375 1395 GCAAATACTGGATGAGATTGAGGCCAATGATTACAACAACTTCACAAAGAGAGCTTATGTGAGTAAAGCCAAGAAGATAGCTGCACTACCAATTGCATATGCAAAATCCCTCTTACGCCCGTCAAGAATATATACCAGTAAGGCTTAAACTGAACATTTAACATCAAAGTTTAGAAGCATATATAGTTGAAACGGATTCAAAGTGGAAAAAAAAATGAAAA 1275 1495 GCAAAATCCCTCTTACGCCCG GCAAAATCCCTCTTACGCCCG ||||||||||||||||||||| ===================== 21 0 0 0 DQ235260|DQ235260.1 Citrus sinensis phytoene synthase mRNA, complete cds. - 1264 1284 GCAAATACTGGATGAGATTGAGGCCAATGATTACAACAACTTCACAAAGAGAGCTTATGTGAGTAAAGCCAAGAAGATAGCTGCACTACCAATTGCATATGCAAAATCCCTCTTACGCCCGTCAAGAATATATACCAGTAAGGCTTAA 1164 1311 GCAAAATCCCTCTTACGCCCG GCAAAATCCCTCTTACGCCCG ||||||||||||||||||||| ===================== 21 0 0 0 EU375851|EU375851.1 X Citrofortunella mitis phytoene synthase mRNA, complete cds. - 1264 1284 GCAAATACTGGATGAGATTGAGGCCAATGATTACAACAACTTCACAAAGAGAGCTTATGTGAGTAAAGCCAAGAAGATAGCTGCACTACCAATTGCATATGCAAAATCCCTCTTACGCCCGTCAAGAATATATACCAGTAAGGCTTAA 1164 1311 GCAAAATCCCTCTTACGCCCG GCAAAATCCCTCTTACGCCCG ||||||||||||||||||||| ===================== 21 0 0 0 EU375852|EU375852.1 Citrus maxima phytoene synthase mRNA, complete cds. - 1267 1287 GCAAATACTGGATGAGATTGAGGCCAACGATTACAACAACTTCACAAAGAGAGCTTATGTGAGTAAAGCCAAGAAGATAGCTGCACTACCAATTGCATATGCAAAATCCCTCTTACGCCCGTCAAGAATATATACCAGTAAGGCTTAA 1167 1314 GCAAAATCCCTCTTACGCCCG GCAAAATCCCTCTTACGCCCG ||||||||||||||||||||| ===================== 21 0 0 0 KP462726|KP462726.1 Citrus maxima PSY mRNA, complete cds. - 1270 1290 GCAAATACTGGATGAGATTGAGGCCAATGATTACAACAACTTCACAAAGAGAGCTTATGTGAGTAAAGCCAAGAAGATAGCTGCACTACCAATTGCATATGCAAAATCCCTCTTACGCCCGTCAAGAATATATACCAGTAAGGCTTAA 1170 1317 GCAAAATCCCTCTTACGCCCG GCAAAATCCCTCTTACGCCCG ||||||||||||||||||||| ===================== 21 0 0 0 OY754326|OY754326.1 Citrus sinensis genome assembly, chromosome: 9. - 4027433 4027453 GCAAATACTGGATGAGATTGAGGCCAATGATTACAACAACTTCACAAAGAGAGCTTATGTGAGTAAAGCCAAGAAGATAGCTGCACTACCAATTGCATATGCAAAATCCCTCTTACGCCCGTCAAGAATATATACCAGTAAGGCTTAAACTGAACATTTAACATCAAAGTTTAGAAGCATATATAGTTGAAACGGATTCAAAGTGGAAACAAAAATGAAAA 4027333 4027553 GCAAAATCCCTCTTACGCCCG GCAAAATCCCTCTTACGCCCG ||||||||||||||||||||| ===================== 21 0 0 0