# [ GGGenome | 2025-04-04 20:04:28 ] # database: DDBJ release 134.0 (Mar, 2024) # query: CGGTTAAGCTTCCAGACATT # count: 18 # query: AATGTCTGGAAGCTTAACCG # count: 13 # name strand start end snippet snippet_pos snippet_end query sbjct align edit match mis del ins DN758617|DN758617.1 G.hir-stem 1121 PCR amplified cotton stem cDNA Gossypium hirsutum cDNA, mRNA sequence. + 315 334 ATGAGGTATCCTTTGGAAGTAGATATTGACGGGAAAGTGAAACCACTCCCTGGATATGAAAATTTCCCGGATGTTGGTGGCAAAGTAATCGGAACTCACTCGGTTAAGCTTCCAGACATTCTTACGACGTAAATCACCATGTGTATCAATTGCAGATTTCTTCTGTTCTTAGTTCTTTGTTGAGGCATTAGTTTGCAAAAAATGTGCGTCGTTGTATGTA 215 434 CGGTTAAGCTTCCAGACATT CGGTTAAGCTTCCAGACATT |||||||||||||||||||| ==================== 20 0 0 0 DN758637|DN758637.1 G.hir-stem 1141 PCR amplified cotton stem cDNA Gossypium hirsutum cDNA, mRNA sequence. + 315 334 ATGAGGTATCCTTTGGAAGTAGATATTGACGGGAAAGTGAAACCACTCCCTGGATATGAAAATTTCCCGGATGTTGGTGGCAAAGTAATCGGAACTCACTCGGTTAAGCTTCCAGACATTCTTACGACGTAAATCACCATGTGTATCAATTGCAGATTTCTTCTGTTCTTAGTTCTTTGTTGAGGCATTAGTTTGCAAAAAATGTGCGTCGTTGTATGTA 215 434 CGGTTAAGCTTCCAGACATT CGGTTAAGCTTCCAGACATT |||||||||||||||||||| ==================== 20 0 0 0 DV849784|DV849784.1 GH_LSL24E03.f GH_LSL Gossypium hirsutum cDNA clone GH_LSL24E03 5', mRNA sequence. + 428 447 ATGAGGTATCCTTTGGAAGTAGATATTGACGGGAAAGTGAAACTACTCCCTGGATATGAAAATTTCCCAGATGTTGGTGGCAAAGTAATCGGAACTCACTCGGTTAAGCTTCCAGACATTCTTACGACGTAAATCACCATGTGTATCAATTGCAGATTTCTTCTGTTCTTAGTTCTTTGTTGAAGTATTAGTTCGCAAAAAATGTGCGTCGTTGTATGTA 328 547 CGGTTAAGCTTCCAGACATT CGGTTAAGCTTCCAGACATT |||||||||||||||||||| ==================== 20 0 0 0 DW232062|DW232062.1 GH_OVFIB_01-01-10R_A04_InvR_22Jan04_032_F Ovules - day of anthesis Gossypium hirsutum cDNA, mRNA sequence. + 123 142 ATGAGGTATCCTTTGGAAGTAGATATTGACGGGAAAGTGAAACCACTCCCTGGATATGAAAATTTCCCAGATGTTGGTGGCAAAGTAATCGGAACTCACTCGGTTAAGCTTCCAGACATTCTTACGACGTAAATCACCATGTGTATCAATTGCAGATTTCTTCTGTTCTTAGTTCTTTGTTGAAGTATTAGTTCGCAAAAAATGTGCGTCGTCATGTGCA 23 242 CGGTTAAGCTTCCAGACATT CGGTTAAGCTTCCAGACATT |||||||||||||||||||| ==================== 20 0 0 0 DW233227|DW233227.1 GH_RTFR_02R_A04_InvR_13Sep04_032_F Root (free) - 7-10 weeks after planting Gossypium hirsutum cDNA, mRNA sequence. + 185 204 ATGAGGTATCCTTTGGAAGTAGATATTGACGGGAAAGTGAAACCACTCCCTGGATATGAAAATTTCCCAGATGTTGGTGGCAAAGTAATCGGAACTCACTCGGTTAAGCTTCCAGACATTCTTACGACGTAAATCACCATGTGTATCAATTGCAGATTTCTTCTGTTCTTAGTTCTTTGTTGAAGTATTAGTTCGCAAAAAATGTGCGTCGTAAGTGTGC 85 304 CGGTTAAGCTTCCAGACATT CGGTTAAGCTTCCAGACATT |||||||||||||||||||| ==================== 20 0 0 0 DW239781|DW239781.1 GH_TS_02-01-10R_D01_InvR_09Feb04_009_F Stem - 3-5 weeks after planting Gossypium hirsutum cDNA, mRNA sequence. + 230 249 ATGAGGTATCCTTTGGAAGTAGATATTGACGGGAAAGTGAAACCACTCCCTGGATATGAAAATTTCCCAGATGTTGGTGGCAAAGTAATCGGAACTCACTCGGTTAAGCTTCCAGACATTCTTACGACGTAAATCACCATGTGTATCAATTGCAGATTTCTTCTGTTCTTAGTTCTTTGTTGAAGTATTAGTTCGCAAAAAATGTGCGTCGTAAGTGTGC 130 349 CGGTTAAGCTTCCAGACATT CGGTTAAGCTTCCAGACATT |||||||||||||||||||| ==================== 20 0 0 0 DW243029|DW243029.1 GH_TSnorm_01-01-01R_A03_InvR_24Feb04_031_F Stem (norm) - 3-5 weeks after planting Gossypium hirsutum cDNA, mRNA sequence. + 230 249 ATGAGGTATCCTTTGGAAGTAGATATTGACGGGAAAGTGAAACCACTCCCTGGATATGAAAATTTCCCAGATGTTGGTGGCAAAGTAATCGGAACTCACTCGGTTAAGCTTCCAGACATTCTTACGACGTAAATCACCATGTGTATCAATTGCAGATTTCTTCTGTTCTTAGTTCTTTGTTGAAGTATTAGTTCGCAAAAAATGTGCGTCGTAAGTGTGC 130 349 CGGTTAAGCTTCCAGACATT CGGTTAAGCTTCCAGACATT |||||||||||||||||||| ==================== 20 0 0 0 DW513770|DW513770.1 GH_TMIRS_176_A07_F Cotton Normalized Library dT primed Gossypium hirsutum cDNA, mRNA sequence. + 110 129 ATGAGGTATCCTTTGGAAGTAGATATTGACGGGAAAGTGAAAGCACTCCCTGGATATGAAAATTTCCCGGATGTTGGTGGCAAAGTAATCGGAACTCACTCGGTTAAGCTTCCAGACATTCTTACGACGTAAATCACCATGTGTATCAATTGCAGATTTCTTCTGTTCTTAGTTCTTTGTTGAGGCATTAGTTTGCAAAAAATGTGCGTCGTCTGTGCAA 10 229 CGGTTAAGCTTCCAGACATT CGGTTAAGCTTCCAGACATT |||||||||||||||||||| ==================== 20 0 0 0 EX166193|EX166193.1 B03_P-22_026 Cotton 1-14 day post anthesis Lambda Zap Express Library Gossypium hirsutum cDNA, mRNA sequence. + 225 244 ATGAGGTATCCTTTGGAAGTAGATATTGACGGGAAAGTGAAACCACTCCCTGGATATGAAAATTTCCCAGATGTTGGTGGCAAAGTAATCGGAACTCACTCGGTTAAGCTTCCAGACATTCTTACGACGTAAATCACCATGTGTATCAATTGCAGATTTCTTCTGTTCTTAGTTCTTTGTTGAAGTATTAGTTCGCAAAAAATGTGCGTCGTTGTATGTA 125 344 CGGTTAAGCTTCCAGACATT CGGTTAAGCTTCCAGACATT |||||||||||||||||||| ==================== 20 0 0 0 EY197104|EY197104.1 B03_P-22_026 Cotton ovule and fiber 3-5 days post anthesis Gossypium hirsutum cDNA, mRNA sequence. + 225 244 ATGAGGTATCCTTTGGAAGTAGATATTGACGGGAAAGTGAAACCACTCCCTGGATATGAAAATTTCCCAGATGTTGGTGGCAAAGTAATCGGAACTCACTCGGTTAAGCTTCCAGACATTCTTACGACGTAAATCACCATGTGTATCAATTGCAGATTTCTTCTGTTCTTAGTTCTTTGTTGAAGTATTAGTTCGCAAAAAATGTGCGTCGTTGTATGTA 125 344 CGGTTAAGCTTCCAGACATT CGGTTAAGCTTCCAGACATT |||||||||||||||||||| ==================== 20 0 0 0 JG454731|JG454731.1 2P12-A3-T3 Subtracted cDNA library from Gossypium hirsutum L. variety Bikaneri Narma Gossypium hirsutum cDNA, mRNA sequence. + 170 189 ATGAGGTATCCTTTGGAAGTAGATATTGACGGGAAAGTGAAACCACTCCCTGGATATGAAAATTTCCCGGATGTTGGTGGCAAAGTAATCGGAACTCACTCGGTTAAGCTTCCAGACATTCTTACGACGTAAATCACCATGTGTATCAATTGCAGATTTCTTCTGTTCTTAGTTCTTTGTTGAGGCATTAGTTTGCAAAAAATGTGCGTCGTTGTATGTA 70 289 CGGTTAAGCTTCCAGACATT CGGTTAAGCTTCCAGACATT |||||||||||||||||||| ==================== 20 0 0 0 JK795586|JK795586.1 E04-54E04 Gossypium barbadense L. line Hai7124 -3 to 5 dpa fiber cDNA library Gossypium barbadense cDNA, mRNA sequence. + 417 436 ATGAGGTATCCTTTGGAAGTAGATATTGACGGGAAAGTGAAGCCACTCCCTGGATATGAAAATTTCCCGGATGTTGGTGGCAAAGTAATCGGAACTCACTCGGTTAAGCTTCCAGACATTCTTACGACGTAAATCACCATGTGTATCAATTGCAGATTTCTTCTGTTCTTAGTTCTTTGTTGAGGCATTAGTTTGCAAAAAATGTGCGTCGTTGTATGTA 317 536 CGGTTAAGCTTCCAGACATT CGGTTAAGCTTCCAGACATT |||||||||||||||||||| ==================== 20 0 0 0 AY138252|AY138252.1 Gossypium hirsutum phospholipase D delta isoform 1a mRNA, complete cds. + 2805 2824 ATGAGGTATCCTTTGGAAGTAGATATTGACGGGAAAGTGAAACCACTCCCTGGATATGAAAATTTCCCAGATGTTGGTGGCAAAGTAATCGGAACTCACTCGGTTAAGCTTCCAGACATTCTTACGACGTAAATCACCATGTGTATCAATTGCAGATTTCTTCTGTTCTTAGTTCTTTGTTGAAGTATTAGTTCGCAAAAAATGTGCGTCGTTGTATGTA 2705 2924 CGGTTAAGCTTCCAGACATT CGGTTAAGCTTCCAGACATT |||||||||||||||||||| ==================== 20 0 0 0 CP106694|CP106694.1 Gossypium herbaceum isolate Zhongcao1 chromosome 2. + 94567513 94567532 ATGAGGTATCCTTTGGAAGTAGATATTGACGGGAAAGTGAAACCACTCCCTGGATATGAAAATTTCCCGGATGTTGGTGGCAAAGTAATCGGAACTCACTCGGTTAAGCTTCCAGACATTCTTACGACGTAAATCACCATGTGTATCAATTGCAGATTTCTTCTGTTCTTAGTTCTTTGTTGAGGCATTAGTTTGCAAAAAATGTGCGTCGTTGTATGTA 94567413 94567632 CGGTTAAGCTTCCAGACATT CGGTTAAGCTTCCAGACATT |||||||||||||||||||| ==================== 20 0 0 0 CP106718|CP106718.1 Gossypium bickii isolate GPG1lz chromosome 2. + 107740379 107740398 ATGAGGTATCCTTTGGAAATAGATATTGACGGGAAAGTGAAACCACTCCCTGGATATGAAAATTTCCCAGATGTTGGTGGCAAAGTAATCGGAACTCACTCGGTTAAGCTTCCAGACATTCTTACGACGTAAATCACCATGTGTATTAATTGCAGATTTCTTCTGTTCTTAGTTCTTAGTTCTTTGTTGAAGTATTAGTTCGCAAAAAATGTGCGTCGTT 107740279 107740498 CGGTTAAGCTTCCAGACATT CGGTTAAGCTTCCAGACATT |||||||||||||||||||| ==================== 20 0 0 0 CP106723|CP106723.1 Gossypium rotundifolium isolate GPK201 chromosome 2. + 139285239 139285258 ATGAGGTATCCTTTGGAAGTAGATATTGACGGGAAAGTGAAACCACTTCCTGGATATGAAAATTTCCCAGATGTTGGTGGCAAAGTAATCGGAACTCACTCGGTTAAGCTTCCAGACATTCTTACGACGTAAATCACCATGTGTATTAATTGCAGATTTCTTCTGTTCTTAGTTCTTAGTTCTTTGTTGAAGTATTAGTTCGCAAAAAATGTGCGTCGTT 139285139 139285358 CGGTTAAGCTTCCAGACATT CGGTTAAGCTTCCAGACATT |||||||||||||||||||| ==================== 20 0 0 0 HQ527790|HQ527790.1 Gossypium herbaceum clone NBRI_A2_652 simple sequence repeat marker, mRNA sequence. + 194 213 GAGGTATCCTTTGGAAGTAGATATTGACNGGGAAAGTGAAACCACTCCCTGGATATGAAAATTTCCCGGATGTTGGTGGCAAAGTAATCNGGAACTCACTCGGTTAAGCTTCCAGACATTCTNTACGACGTAAATCACCATGTGTATCAATNTGCAGATTTCTTCTGTTCTTAGTTCTTTGTTGAGGCATTAGTTTGCAAAAAATGTGCGTCNGTTGTAT 94 313 CGGTTAAGCTTCCAGACATT CGGTTAAGCTTCCAGACATT |||||||||||||||||||| ==================== 20 0 0 0 JX964656|JX964656.1 Gossypium hirsutum clone NBRI_TRANS-925 microsatellite sequence. + 40 59 ATTTCCCGGATGTTGGTGGCAAAGTAATCGGAACTCACTCGGTTAAGCTTCCAGACATTCTTACGACGTAAATCACCATGTGTATCAATTGCAGATTTCTTCTGTTCTTAGTTCTTTGTTGAAGTATTAGTTCGCAAAAAATGTGCGTCGTTGTATGTA 1 159 CGGTTAAGCTTCCAGACATT CGGTTAAGCTTCCAGACATT |||||||||||||||||||| ==================== 20 0 0 0 BQ411825|BQ411825.1 GA__Ed0043B08r Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Ed0043B08r, mRNA sequence. - 284 303 TTCTTACAACGACGCCCATTTTTTGCAAACTAATGCCTCAACAAAGAACTAAGAACAGAAGAAATCTGCAATTGATACACATGGTGATTTACGTCGTAAGAATGTCTGGAAGCTTAACCGAGTGAGTTCCGATTACTTTGCCACCAACATCCGGGAAATTTTCATATCCAGGGAGTGGTTTCACTTTTCCGTCAATATCTACTTCCAAAGGATACCTCAT 184 403 AATGTCTGGAAGCTTAACCG AATGTCTGGAAGCTTAACCG |||||||||||||||||||| ==================== 20 0 0 0 CO086387|CO086387.1 GR__Ea04F05.r GR__Ea Gossypium raimondii cDNA clone GR__Ea04F05 3', mRNA sequence. - 238 257 TACATACAACGACGTACATTTTTTGCGAACTAATACTTCAACAAAGAACTAAAAACAAAAAAAATCTGCAATTGATACACATGGGGATTTACGTCGTAAAAATGTCTGGAAGCTTAACCGAGTGAGTTCCGATTACTTTGCCACCAACATCTGGGAAATTTTCATATCCAGGGAGGGGTTTCACTTTCCCGTCAATATCTACTTCCAAAGGATACCTCAT 138 357 AATGTCTGGAAGCTTAACCG AATGTCTGGAAGCTTAACCG |||||||||||||||||||| ==================== 20 0 0 0 CO091425|CO091425.1 GR__Ea11O09.r GR__Ea Gossypium raimondii cDNA clone GR__Ea11O09 3', mRNA sequence. - 239 258 TACATACAACGACGTACATTTTTTGCGAACTAATACTTCAACAAAAAACTAAAAACAAAAAAAATCTGCAATTGATACACATGGGGATTTACGTCGTAAAAATGTCTGGAAGCTTAACCGAGGGAGTTCCGATTACTTTGCCACCAACATCTGGGAAATTTTCATATCCAGGGAGGGGTTTCACTTTCCCGGCAATATCTACTTCCAAAGGATACCTCAT 139 358 AATGTCTGGAAGCTTAACCG AATGTCTGGAAGCTTAACCG |||||||||||||||||||| ==================== 20 0 0 0 CO094835|CO094835.1 GR__Ea17C21.f GR__Ea Gossypium raimondii cDNA clone GR__Ea17C21 5', mRNA sequence. - 238 257 TACATACAACGACGTACATTTTTTGCGAACTAATACTTCAACAAAAAACTAAAAACAGAAAAAATCTGCAATTGATACACATGGTGATTTACGTCGGAAAAATGTCTGGAAGCTTAACCGAGTGAGTTCCGATTACTTTGCCACCAACATCTGGGAAATTTTCATATCCAGGGAGGGGGTTCACTTTCCCGTCAATATCTACTTCCAAAGGATACCTCAT 138 357 AATGTCTGGAAGCTTAACCG AATGTCTGGAAGCTTAACCG |||||||||||||||||||| ==================== 20 0 0 0 CO100234|CO100234.1 GR__Ea25I04.f GR__Ea Gossypium raimondii cDNA clone GR__Ea25I04 5', mRNA sequence. - 238 257 TACATACAACGACGTACATTTTTTGGGAACTAATACTTCAACAAAAAACTAAAAACAAAAAAAATCTGCAATTGAAACCCATGGGGATTTACCTCGAAAAAATGTCTGGAAGCTTAACCGAGGGAGTTCCGATTACTTTGCCCCCAACATCTGGGAAATTTTCATATCCAGGGGGGGGTTTCCCTTTCCCGTCAAAATCTACTTCCAAAGGAAACCTCAA 138 357 AATGTCTGGAAGCTTAACCG AATGTCTGGAAGCTTAACCG |||||||||||||||||||| ==================== 20 0 0 0 CO105729|CO105729.1 GR__Eb0036A18.f GR__Eb Gossypium raimondii cDNA clone GR__Eb0036A18 5', mRNA sequence. - 238 257 TACATACAACGACGTACATTTTTTGCGAACTAATACTTCAACAAAGAACTAAGAACAGAAGAAATCTGCAATTGATACACATGGTGATTTACGTCGTAAGAATGTCTGGAAGCTTAACCGAGTGAGTTCCGATTACTTTGCCACCAACATCTGGGAAATTTTCATATCCAGGGAGTGGTTTCACTTTCCCGTCAATATCTACTTCCAAAGGATACCTCAT 138 357 AATGTCTGGAAGCTTAACCG AATGTCTGGAAGCTTAACCG |||||||||||||||||||| ==================== 20 0 0 0 CO120708|CO120708.1 GR__Eb024G17.f GR__Eb Gossypium raimondii cDNA clone GR__Eb024G17 5', mRNA sequence. - 238 257 TACATACAACGACGTACATTTTTTGCGAACTAATACTTCAACAAAGAACTAAGAACAGAAGAAATCTGCAATTGATACACATGGGGATTTACGTCGTAAGAATGTCTGGAAGCTTAACCGAGTGAGTTCCGATTACTTTGCCACCAACATCTGGGAAATTTTCATATCCAGGGAGTGGTTTCACTTTCCCGTCAATATCTACTTCCAAAGGATACCTCAT 138 357 AATGTCTGGAAGCTTAACCG AATGTCTGGAAGCTTAACCG |||||||||||||||||||| ==================== 20 0 0 0 DT048657|DT048657.1 COT_DD_B08 Fiber and Ovule of Xu-142 Lambda Zap Express Library Gossypium hirsutum cDNA 3' similar to (AY138252) phospholipase D delta isoform 1a [Gossypium hirsutum], mRNA sequence. - 266 285 TACATACAACGACGCACATTTTTTGCAAACTAATGCCTCAACAAAGAACTAAGAACAGAAGAAATCTGCAATGGGTACACATGGTGATTTACGTCGTAAGAATGTCTGGAAGCTTAACCGAGTGAGTTCCGATTACTTTGCCACCAACATCCGGGAAATTTTCATATCCAGGGAGTGGTTTCACTTTCCCGTCAATATCTACTTCCAAAGGATACCTCAT 166 385 AATGTCTGGAAGCTTAACCG AATGTCTGGAAGCTTAACCG |||||||||||||||||||| ==================== 20 0 0 0 DT048773|DT048773.1 COT_DE_F10 Fiber and Ovule of Xu-142 Lambda Zap Express Library Gossypium hirsutum cDNA 3' similar to (AY138252) phospholipase D delta isoform 1a [Gossypium hirsutum], mRNA sequence. - 279 298 TACATACAACGACGCACATTTTTTGCAAACTAATGCCTCAACAAAGAACTAAGAACAGAAGAAATCTGCAATTGATACACATGGTGATTTACGTCGTAAGAATGTCTGGAAGCTTAACCGAGTGAGTTCCGATTACTTTGCCACCAACATCCGGGAAATTTTCATATCCAGGGAGTGGTTTCACTTTCCCGTCAATATCTACTTCCAAAGGATACCTCAT 179 398 AATGTCTGGAAGCTTAACCG AATGTCTGGAAGCTTAACCG |||||||||||||||||||| ==================== 20 0 0 0 JZ117970|JZ117970.1 G07_51500.79.S1108194026.LDYN1-2479.M13-R.ab1 Gossypium hirsutum L. cotton leaves cDNA library Gossypium hirsutum cDNA 3', mRNA sequence. - 263 282 TACATACAACGACGCACATTTTTTGCGAACTAATACTTCAACAAAGAACTAAGAACAGAAGAAATCTGCAATTGATACACATGGTGATTTACGTCGTAAGAATGTCTGGAAGCTTAACCGAGTGAGTTCCGATTACTTTGCCACCAACATCTGGGAAATTTTCATATCCAGGGAGTGGTTTCACTTTCCCGTCAATATCTACTTCCAAAGGATACCTCAT 163 382 AATGTCTGGAAGCTTAACCG AATGTCTGGAAGCTTAACCG |||||||||||||||||||| ==================== 20 0 0 0 CP032554|CP032554.1 Gossypium raimondii isolate D5-4 chromosome D5_02. - 294715 294734 TACATACAACGACGTACATTTTTTGCGAACTAATACTTCAACAAAGAACTAAGAACAGAAGAAATCTGCAATTGATACACATGGTGATTTACGTCGTAAGAATGTCTGGAAGCTTAACCGAGTGAGTTCCGATTACTTTGCCACCAACATCTGGGAAATTTTCATATCCAGGGAGTGGTTTCACTTTCCCGTCAATATCTACTTCCAAAGGATACCTCAT 294615 294834 AATGTCTGGAAGCTTAACCG AATGTCTGGAAGCTTAACCG |||||||||||||||||||| ==================== 20 0 0 0 CP032572|CP032572.1 Gossypium turneri isolate D10-2 chromosome D10_02. - 286516 286535 TACATACAACGACGCACATTTTTTGCGAACTAATACTTCAACAAAGAACTAAGAACAGAAGAAATCTGCAATTGATACACATGGTGATTTACGTCGTAAGAATGTCTGGAAGCTTAACCGAGTGAGTTCCGATTACTTTGCCACCAACATCCGGGAAATTTTCATATCCAGGGAGTGGTTTCACTTTCCCGTCAATATCTACTTCCAAAGGATACCTCAT 286416 286635 AATGTCTGGAAGCTTAACCG AATGTCTGGAAGCTTAACCG |||||||||||||||||||| ==================== 20 0 0 0 CP106707|CP106707.1 Gossypium herbaceum isolate GPA1alz chromosome 2. - 284034 284053 TACATACAACGACGCACATTTTTTGCAAACTAATGCCTCAACAAAGAACTAAGAACAGAAGAAATCTGCAATTGATACACATGGTGATTTACGTCGTAAGAATGTCTGGAAGCTTAACCGAGTGAGTTCCGATTACTTTGCCACCAACATCCGGGAAATTTTCATATCCAGGGAGTGGTTTCACTTTCCCGTCAATATCTACTTCCAAAGGATACCTCAT 283934 284153 AATGTCTGGAAGCTTAACCG AATGTCTGGAAGCTTAACCG |||||||||||||||||||| ==================== 20 0 0 0