# [ GGGenome | 2025-04-04 20:13:12 ] # database: DDBJ release 134.0 (Mar, 2024) # query: GCTGTAGGGCTCTCTACTCG # count: 6 # query: CGAGTAGAGAGCCCTACAGC # count: 20 # name strand start end snippet snippet_pos snippet_end query sbjct align edit match mis del ins AC243106|AC243106.1 Gossypium raimondii clone GR__Ba0005I14-jfn, complete sequence. + 69528 69547 TGATGGGCTTGTACACAGCTGTTCCGTCAGCCCGAAAGGCTAAACGCATGTTCTGTATCGCCGGTTGTGACGCCACCGGACTCTTCTGTTGCATGCCCAAGCTGTAGGGCTCTCTACTCGCCATCATTCCCGTCTCAGATCCCGACATTCTTCTCCTTTTCTGTTTGGTGTTTAAAATTGAATTATATATGCTTTTTCAGTTCTTTCCTTTGCTCGTACC 69428 69647 GCTGTAGGGCTCTCTACTCG GCTGTAGGGCTCTCTACTCG |||||||||||||||||||| ==================== 20 0 0 0 AC243164|AC243164.1 Gossypium hirsutum clone MX177F15-jon, complete sequence. + 77717 77736 TGATGGGCTTGTACACAGCTGTTCCGTCAGCCCTAAAGGCTAAACGCATGTTCTGTATCGCCGGTTGTGACGCCACCGGACTCTTCTGTTGCATGCCCAAGCTGTAGGGCTCTCTACTCGCCATCATTCCCGTCTCAGATCCCGACATTCTTCTCCTTTTTCTGTTTGGTGTTTAAAATTGAATTATATATGCTTTTTCAGTTCTTTCCTTTGCTCATAC 77617 77836 GCTGTAGGGCTCTCTACTCG GCTGTAGGGCTCTCTACTCG |||||||||||||||||||| ==================== 20 0 0 0 CP032571|CP032571.1 Gossypium turneri isolate D10-2 chromosome D10_01. + 46074852 46074871 TGATGGGCTTGTACACAGCTGTTCCGTCAGCCCTAAAGGCTAAACGCATGTTCTGTATCGCCGGTTGTGACGCCACCGGACTCTTCTGTTGGATGCCCAAGCTGTAGGGCTCTCTACTCGCCATCATTCCCGTCTCAGATCCCGACATTCTTCTCCTTTTTCTGTTTGGTGTTTAAAATTGAATTATATATGCTTTTTCAGTTCTTTCCTTTGCTCGTAC 46074752 46074971 GCTGTAGGGCTCTCTACTCG GCTGTAGGGCTCTCTACTCG |||||||||||||||||||| ==================== 20 0 0 0 CP106687|CP106687.1 Gossypium herbaceum isolate Zhongcao1 chromosome 1. + 105786333 105786352 TGATGGGCTTGTACACAGCTGTTCCGTCAGACCTAAAGGCTAAACGCATGTTCTGTATCACCGGTTGTGACGCCACCGGACTCTTCTGTTGCATGCCCAAGCTGTAGGGCTCTCTACTCGCCATCATTCCCGTCTCAGATCCCGACATTCTTCTCCTTTTTCTGTTTGGTGTTTAAAATTGAATTATATATGCTTTTTCAGTTCTTTCCTTTGCTCGTAC 105786233 105786452 GCTGTAGGGCTCTCTACTCG GCTGTAGGGCTCTCTACTCG |||||||||||||||||||| ==================== 20 0 0 0 CP106722|CP106722.1 Gossypium rotundifolium isolate GPK201 chromosome 1. + 164734209 164734228 TGATGGGCTTGTACACAGCTGTTCCGTCAGCCCTAAAGGCTAAACGCATGTTCTGTATCACCGGTTGTGACGCCACCGGACTCTTCTGTTGCATGCCCAAGCTGTAGGGCTCTCTACTCGCCATCATTCCCGTCTCAGATCCTGACATTCTTCTCCTTTTTCTGTTTGGTGTATAAAATTGAATTATATATGCTTTTTCAGTGCTTTCCTTTGCTCGTAC 164734109 164734328 GCTGTAGGGCTCTCTACTCG GCTGTAGGGCTCTCTACTCG |||||||||||||||||||| ==================== 20 0 0 0 OY284465|OY284465.1 Theobroma cacao genome assembly, chromosome: 8. + 19524258 19524277 TGATGGGCTTGTACACAGCTGTTCCGTCAGCACTAAAGGCTAAACGCATGTTCTGTATCACCGGCTGTGACGCAACCGGACTCTTCTGTTGCATGCCCACGCTGTAGGGCTCTCTACTCGTCATCACTCCCGTCTCAGATCCCGACATTTTTTCTCTTTATCTGGTTGGTGTACTAAAATTCCATACGCCCCCCCAACTCTGCCCACCAACAAAAATTAA 19524158 19524377 GCTGTAGGGCTCTCTACTCG GCTGTAGGGCTCTCTACTCG |||||||||||||||||||| ==================== 20 0 0 0 GP491936|GP491936.1 Sequence 22933 from patent US 7557201. - 132 151 ATCCCTACGTTTTTTTTTTCTCATGCGTCTCTTAGTCTCTGAAAATTTCCTATTTATTGAAAAAGGAGAAGAATGTCGGGATCTGAGACGGGAATGATGGCGAGTAGAGAGCCCTACAGCTTGGGCATGCAACAGAAGAGTCCGGTGGCGTCACAACCGGTGATACAGAACATGCGTTTAGCCTTTAGGTCTGACGGAACAGCTGTGTACAAGCCCATCA 32 251 CGAGTAGAGAGCCCTACAGC CGAGTAGAGAGCCCTACAGC |||||||||||||||||||| ==================== 20 0 0 0 GY467956|GY467956.1 Sequence 15731 from patent US 8030546. - 438 457 GTATGAGCAAAGGAAAGAACTGAAAAAGCATATATAATTCAATTTTAAACACCAAACAGAAAAAGGAGAAGAATGTCGGGATCTGAGACGGGAATGATGGCGAGTAGAGAGCCCTACAGCTTGGGCATGCAACAGAAGAGTCCGGTGGCGTCACAACCGGCGATACAGAACATGCGTTTAGCCTTTAGGGCTGACGGAACAGCTGTGTACAAGCCCATCA 338 557 CGAGTAGAGAGCCCTACAGC CGAGTAGAGAGCCCTACAGC |||||||||||||||||||| ==================== 20 0 0 0 MO979109|MO979109.1 Sequence 15731 from patent US 10597667. - 438 457 GTATGAGCAAAGGAAAGAACTGAAAAAGCATATATAATTCAATTTTAAACACCAAACAGAAAAAGGAGAAGAATGTCGGGATCTGAGACGGGAATGATGGCGAGTAGAGAGCCCTACAGCTTGGGCATGCAACAGAAGAGTCCGGTGGCGTCACAACCGGCGATACAGAACATGCGTTTAGCCTTTAGGGCTGACGGAACAGCTGTGTACAAGCCCATCA 338 557 CGAGTAGAGAGCCCTACAGC CGAGTAGAGAGCCCTACAGC |||||||||||||||||||| ==================== 20 0 0 0 BQ404803|BQ404803.1 GA__Ed0075A07f Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Ed0075A07f, mRNA sequence. - 95 114 NCTTAGAACTGGAGACTCCCGCTTCTTGCGGTCGGCACTAGTGGTTCCAAACAATTCGCACGTTATATGTCGGGATCTGTANACGGGATGATGGCGAGTAGAGAGCCCTACAGCTTGGGCATGCAACAGAAGAGTCCGGTGGCGTCACAACCGGTGATACAGAACATGCGTTTAGCCTTTAGGTCTGACGGAACAGCTGTGTACAAGCCCATCA 1 214 CGAGTAGAGAGCCCTACAGC CGAGTAGAGAGCCCTACAGC |||||||||||||||||||| ==================== 20 0 0 0 DT557574|DT557574.1 EST1068214 GH_TMO Gossypium hirsutum cDNA, mRNA sequence. - 419 438 GAACGAGCAAAGGAAAGAACTGAAAAAGCATATATAATTCAATTTTAAACACCAAACAGAAAAAGGAGAAGAATGTCGGGATCTGAGACGGGAATGATGGCGAGTAGAGAGCCCTACAGCTTGGGCATGCAACAGAAGAGTCCGGTGGCGTCACAACCGGTGATACAGAACATGCGTTTAGCCTTTAGGTCTGACGGAACAGCTGTGTACAAGCCCATCA 319 538 CGAGTAGAGAGCCCTACAGC CGAGTAGAGAGCCCTACAGC |||||||||||||||||||| ==================== 20 0 0 0 DT559024|DT559024.1 EST1069664 GH_TMO Gossypium hirsutum cDNA, mRNA sequence. - 438 457 GTATGAGCAAAGGAAAGAACTGAAAAAGCATATATAATTCAATTTTAAACACCAAACAGAAAAAGGAGAAGAATGTCGGGATCTGAGACGGGAATGATGGCGAGTAGAGAGCCCTACAGCTTGGGCATGCAACAGAAGAGTCCGGTGGCGTCACAACCGGCGATACAGAACATGCGTTTAGCCTTTAGGGCTGACGGAACAGCTGTGTACAAGCCCATCA 338 557 CGAGTAGAGAGCCCTACAGC CGAGTAGAGAGCCCTACAGC |||||||||||||||||||| ==================== 20 0 0 0 ES793498|ES793498.1 UFL_534_06 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence. - 152 171 ATCCCTACGTTTTTTTTTTCTCATCCGTCTCTTAGTCTCTGAAAATTTCCTATTTATTGAAAAAGGAGAAGAATGTCGGGATCTGAGACGGGAATGATGGCGAGTAGAGAGCCCTACAGCTTGGGCATGCAACAGAAGAGTCCGGTGGCGTCACAACCGGTGATACAGAACATGCGTTTAGCCTTTAGGTCTGACGGAACAGCTGTGTACAAGCCCATCA 52 271 CGAGTAGAGAGCCCTACAGC CGAGTAGAGAGCCCTACAGC |||||||||||||||||||| ==================== 20 0 0 0 ES814153|ES814153.1 UFL_174_95 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence. - 328 347 GAACGAGCAAAGGAAAGAACTGAAAAAGCATATATAATTCAATTTTAAACACCAAACAGAAAAAGGAGAAGAATGTCGGGATCTGAGACGGGAATGATGGCGAGTAGAGAGCCCTACAGCTTGGGCATGCAACAGAAGAGTCCGGTGGCGTCACAACCGGTGATACAGAACATGCGTTTAGCCTTTAGGTCTGACGGAACAGCTGTGTACAAGCCCATCA 228 447 CGAGTAGAGAGCCCTACAGC CGAGTAGAGAGCCCTACAGC |||||||||||||||||||| ==================== 20 0 0 0 ES817979|ES817979.1 UFL_191_52 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence. - 220 239 GAACGAGCAAAGGAAAGAACTGAAAAAGCATATATAATTCAATTTTAAACACCAAACAGAAAAAGGAGAAGAATGTCGGGATCTGAGACGGGAATGATGGCGAGTAGAGAGCCCTACAGCTTGGGCATGCAACAGAAGAGTCCGGTGGCGTCACAACCGGTGATACAGAACATGCGTTTAGCCTTTAGGTCTGACGGAACAGCTGTGTACAAGCCCATCA 120 339 CGAGTAGAGAGCCCTACAGC CGAGTAGAGAGCCCTACAGC |||||||||||||||||||| ==================== 20 0 0 0 JZ368595|JZ368595.1 ndcxa0_0003_E12.ab1 Upland cotton seedling roots at 48h control (ndcxa) Gossypium hirsutum cDNA 5', mRNA sequence. - 107 126 GAATTCCTTAGTTTTTTTTCTCATCCGTCTCTTAGTCTCTGAAATTTTCCTATTTATTGAAAAAGGAGAAGAATGTCGGGATCTGAGACGGGAATGATGGCGAGTAGAGAGCCCTACAGCTTGGGCATGCAACAGAAGAGTCCGGTGGCGTCACAACCGGCGATACAGAACATGCGTTTAGCCTTTAGGGCTGACGGAACAGCTGTGTACAAGCCCATCA 7 226 CGAGTAGAGAGCCCTACAGC CGAGTAGAGAGCCCTACAGC |||||||||||||||||||| ==================== 20 0 0 0 JZ376576|JZ376576.1 ndcxc0_0033_B12.ab1 Upland cotton seedling roots at 0h control (ndcxc) Gossypium hirsutum cDNA 5', mRNA sequence. - 231 250 GAACGAGCAAAGGAAAGAACTGAAAAAGCATATATAATTCAATTTTAAACACCAAACAGAAAAAGGAGAAGAATGTCGGGATCTGAGACGGGAATGATGGCGAGTAGAGAGCCCTACAGCTTGGGCATGCAACAGAAGAGTCCGGTGGCGTCACAACCGGTGATACAGAACATGCGTTTAGCCTTTAGGTCTGACGGAACAGCTGTGTACAAGCCCATCA 131 350 CGAGTAGAGAGCCCTACAGC CGAGTAGAGAGCCCTACAGC |||||||||||||||||||| ==================== 20 0 0 0 AC243098|AC243098.1 Gossypium arboreum clone GM105F19-jnd, complete sequence. - 76684 76703 GTACGAGCAAAGGAAAGAACTGAAAAAGCATATATAATTCAATTTTAAACACCAAACAGAAAAAGGAAAAGAATGTCGGGATCTGAGACGGGAATGATGGCGAGTAGAGAGCCCTACAGCTTGGGCATGCAACAGAAGAGTCCGGTGGCGTCACAACCGGTGATACAGAACATGCGTTTAGCCTTTAGGTCTGACGGAACAGCTGTGTACAAGCCCATCA 76584 76803 CGAGTAGAGAGCCCTACAGC CGAGTAGAGAGCCCTACAGC |||||||||||||||||||| ==================== 20 0 0 0 CP032244|CP032244.1 Gossypioides kirkii chromosome KI_01. - 8943403 8943422 ATACGAGCAAAGGAAAGAACTGAAATAGCATATATAATTCAATTTTAGAACCCCAAACAGAAAAGGAGAAGAATGTCGGGATCTGAGACAGGAATGATGGCGAGTAGAGAGCCCTACAGCTTGGGCATGCAACAGAAGAGTCCGGTGGCGTCACAACCGGTGATACAGAACATGCGTTTAGCCTTTAGCGCTGACGGAACAGCTGTGTACAAGCCCATCA 8943303 8943522 CGAGTAGAGAGCCCTACAGC CGAGTAGAGAGCCCTACAGC |||||||||||||||||||| ==================== 20 0 0 0 CP032553|CP032553.1 Gossypium raimondii isolate D5-4 chromosome D5_01. - 14136476 14136495 GGTACGAGCAAAGGAAAGAACTGAAAAAGCATATATAATTCAATTTTAAACACCAAACAGAAAAGGAGAAGAATGTCGGGATCTGAGACGGGAATGATGGCGAGTAGAGAGCCCTACAGCTTGGGCATGCAACAGAAGAGTCCGGTGGCGTCACAACCGGCGATACAGAACATGCGTTTAGCCTTTCGGGCTGACGGAACAGCTGTGTACAAGCCCATCA 14136376 14136595 CGAGTAGAGAGCCCTACAGC CGAGTAGAGAGCCCTACAGC |||||||||||||||||||| ==================== 20 0 0 0 CP106699|CP106699.1 Gossypium herbaceum isolate GPA1alz chromosome 1. - 19883298 19883317 GTACGAGCAAAGGAAAGAACTGAAAAAGCATATATAATTCAATTTTAAACACCAAACAGAAAAAGGAGAAGAATGTCGGGATCTGAGACGGGAATGATGGCGAGTAGAGAGCCCTACAGCTTGGGCATGCAACAGAAGAGTCCGGTGGCGTCACAACCGGTGATACAGAACATGCGTTTAGCCTTTAGGTCTGACGGAACAGCTGTGTACAAGCCCATCA 19883198 19883417 CGAGTAGAGAGCCCTACAGC CGAGTAGAGAGCCCTACAGC |||||||||||||||||||| ==================== 20 0 0 0 CP106715|CP106715.1 Gossypium bickii isolate GPG1lz chromosome 1. - 24146558 24146577 GTACGAGCAAAGGAAAGAACTGAAAAAGCATATATAATTCAATTTTAAACACCAAACAGAAAAAGGAGAAGTATGTCGGGATCTGAGACGGGAATGATGGCGAGTAGAGAGCCCTACAGCTTGGGCATGCAACAGAAGAGTCCGGTGGCGTCACAACCGGTGATACAGAACATGCGTTTAGCCTTTAGGGCTGACGGAACAGCTGTGTACAAGCCCATCA 24146458 24146677 CGAGTAGAGAGCCCTACAGC CGAGTAGAGAGCCCTACAGC |||||||||||||||||||| ==================== 20 0 0 0 CP139298|CP139298.1 Theobroma cacao isolate Sca6 chromosome 8. - 4968122 4968141 TTAATTTTTGTTGGTGGGCAGAGTTGGGGGGGCGTATGGAATTTTAGTACACCAACCAGATAAAGAGAAAAAATGTCGGGATCTGAGACGGGAGTGATGACGAGTAGAGAGCCCTACAGCGTGGGCATGCAACAGAAGAGTCCGGTTGCGTCACAGCCGGTGATACAGAACATGCGTTTAGCCTTTAGTGCTGACGGAACAGCTGTGTACAAGCCCATCA 4968022 4968241 CGAGTAGAGAGCCCTACAGC CGAGTAGAGAGCCCTACAGC |||||||||||||||||||| ==================== 20 0 0 0 LT594795|LT594795.1 Theobroma cacao genome assembly, chromosome: VIII. - 4886046 4886065 TTAATTTTTGTTGGTGGGCAGAGTTGGGGGGGCGTATGGAATTTTAGTACACCAACCAGATAAAGAGAAAAAATGTCGGGATCTGAGACGGGAGTGATGACGAGTAGAGAGCCCTACAGCGTGGGCATGCAACAGAAGAGTCCGGTTGCGTCACAGCCGGTGATACAGAACATGCGTTTAGCCTTTAGTGCTGACGGAACAGCTGTGTACAAGCCCATCA 4885946 4886165 CGAGTAGAGAGCCCTACAGC CGAGTAGAGAGCCCTACAGC |||||||||||||||||||| ==================== 20 0 0 0 OY284445|OY284445.1 Theobroma cacao genome assembly, chromosome: 8. - 4988735 4988754 TTAATTTTTGTTGGTGGGCAGAGTTGGGGGGGCGTATGGAATTTTAGTACACCAACCAGATAAAGAGAAAAAATGTCGGGATCTGAGACGGGAGTGATGACGAGTAGAGAGCCCTACAGCGTGGGCATGCAACAGAAGAGTCCGGTTGCGTCACAGCCGGTGATACAGAACATGCGTTTAGCCTTTAGTGCTGACGGAACAGCTGTGTACAAGCCCATCA 4988635 4988854 CGAGTAGAGAGCCCTACAGC CGAGTAGAGAGCCCTACAGC |||||||||||||||||||| ==================== 20 0 0 0 OY284455|OY284455.1 Theobroma cacao genome assembly, chromosome: 8. - 4952216 4952235 TTAATTTTTGTTGGTGGGCAGAGTTGGGGGGGCGTATGGAATTTTAGTACACCAACCAGATAAAGAGAAAAAATGTCGGGATCTGAGACGGGAGTGATGACGAGTAGAGAGCCCTACAGCGTGGGCATGCAACAGAAGAGTCCGGTTGCGTCACAGCCGGTGATACAGAACATGCGTTTAGCCTTTAGTGCTGACGGAACAGCTGTGTACAAGCCCATCA 4952116 4952335 CGAGTAGAGAGCCCTACAGC CGAGTAGAGAGCCCTACAGC |||||||||||||||||||| ==================== 20 0 0 0