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Database:

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2020-10-29 10:53:24, GGGenome : DDBJ release 120.0, SYN division (Jun, 2020)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Eukaryotic synthetic construct chromosome 1.
CP034487.1:83452476-83452490
CTAATTAATGAATAGTAAGTATATTTTCTC83452476TTCATTGACAACATTTTTCCTCTTACTTTATTGTAAGAATACAAT
Eukaryotic synthetic construct chromosome 11.
CP034489.1:24434030-24434044
TTGAGTTTCCTGGAACATAGATATGTCTTG24434030TTCATTGACAACATTCTAGCATTGAGGACAGTGAATAGAGAAAAG
Eukaryotic synthetic construct chromosome 13.
CP034491.1:65745547-65745561
GCAGTCTGGAGGTTCTCCCTGGAGGCTGTA65745547TTCATTGACAACATTTCCTGAGGTAACTCACACTGAGGTGACAAC
Eukaryotic synthetic construct chromosome 18.
CP034496.1:27141689-27141703
ATATTTATATATGTATATATTTCATATTAT27141689TTCATTGACAACATTTACTTGGGAGATTTGTCTCAACAAAAATTA
Eukaryotic synthetic construct chromosome 19.
CP034497.1:41507266-41507280
AAGCCACCACACCCGGCCTATCTTAGCTTT41507266TTCATTGACAACATTAGTATAATGTTAACAGCTCTCCTAAGGGAG
Eukaryotic synthetic construct chromosome 2.
CP034498.1:161213115-161213129
ATTGCAGCAAAGAAGCACATTTATATTCTA161213115TTCATTGACAACATTAGCATATAATGCAAATTTACTTTGGAACAT
Eukaryotic synthetic construct chromosome 3.
CP034502.1:15229790-15229804
ATTGTAATAGCCAGAAATTGGAAACATATA15229790TTCATTGACAACATTTAAGATTATAATATAGTCATATAATAGTCC
Eukaryotic synthetic construct chromosome 3.
CP034502.1:84559845-84559859
TTGGTTTTGTATATATTAAATAGTTGAAAC84559845TTCATTGACAACATTAAGTTTGTTTTCTAGGCTCTATTGGGATAA
Eukaryotic synthetic construct chromosome 3.
CP034502.1:210776939-210776953
ATTGTAATAGCCAGAAATTGGAAACATATA210776939TTCATTGACAACATTTAAGATTATAATATAGTCATATAATAGTCC
Eukaryotic synthetic construct chromosome 4.
CP034503.1:16124651-16124665
AACGAAAGGCGTTTGAGGAAAGCCTGATAA16124651TTCATTGACAACATTACCATCAACCACACCTTACCATTCCTAGGA
Eukaryotic synthetic construct chromosome 4.
CP034503.1:63021140-63021154
TCTTCAAATATTTTACAGAGTTCAACTCTT63021140TTCATTGACAACATTATGACATTATGCTGATTGGATCCAGTGAGT
Eukaryotic synthetic construct chromosome 4.
CP034503.1:149823218-149823232
CAGAATATATTATCGCTTTAAACACAGATT149823218TTCATTGACAACATTTTGTGGGCACCCATTTAATATTAATATTAA
Eukaryotic synthetic construct chromosome 4.
CP034503.1:166712150-166712164
AAAAACGTCTGATTTTGTGTAACACTCCTT166712150TTCATTGACAACATTAAACAGCAATTAACTATTTGCTGATTACAT
Eukaryotic synthetic construct chromosome 4.
CP034503.1:204889498-204889512
AACGAAAGGCGTTTGAGGAAAGCCTGATAA204889498TTCATTGACAACATTACCATCAACCACACCTTACCATTCCTAGGA
Eukaryotic synthetic construct chromosome 6.
CP034505.1:62648216-62648230
CTATTTCAATCAACCATCTTGTAATCATAC62648216TTCATTGACAACATTTTACTCATACTATAATAAGTTGCTATTTCT
Eukaryotic synthetic construct chromosome 7.
CP034506.1:3553673-3553687
GTGGTGCCTGGCCTGAGTCAGCTCATTAGC3553673TTCATTGACAACATTGGTTCGTTCAACAAATATTGCCTGAGAAGA
Eukaryotic synthetic construct chromosome 7.
CP034506.1:160703102-160703116
GTGGTGCCTGGCCTGAGTCAGCTCATTAGC160703102TTCATTGACAACATTGGTTCGTTCAACAAATATTGCCTGAGAAGA
Eukaryotic synthetic construct chromosome 8.
CP034507.1:31346145-31346159
GTATTTTTAAATTCATCGATATTTCCACTT31346145TTCATTGACAACATTATTAAGTTTTATTGTGTCTCTTTTTTCAAA
Eukaryotic synthetic construct chromosome 1.
CP034512.1:83452476-83452490
CTAATTAATGAATAGTAAGTATATTTTCTC83452476TTCATTGACAACATTTTTCCTCTTACTTTATTGTAAGAATACAAT
Eukaryotic synthetic construct chromosome 11.
CP034514.1:24434030-24434044
TTGAGTTTCCTGGAACATAGATATGTCTTG24434030TTCATTGACAACATTCTAGCATTGAGGACAGTGAATAGAGAAAAG
Eukaryotic synthetic construct chromosome 13.
CP034516.1:65745547-65745561
GCAGTCTGGAGGTTCTCCCTGGAGGCTGTA65745547TTCATTGACAACATTTCCTGAGGTAACTCACACTGAGGTGACAAC
Eukaryotic synthetic construct chromosome 18.
CP034521.1:27141689-27141703
ATATTTATATATGTATATATTTCATATTAT27141689TTCATTGACAACATTTACTTGGGAGATTTGTCTCAACAAAAATTA
Eukaryotic synthetic construct chromosome 19.
CP034522.1:41507266-41507280
AAGCCACCACACCCGGCCTATCTTAGCTTT41507266TTCATTGACAACATTAGTATAATGTTAACAGCTCTCCTAAGGGAG
Eukaryotic synthetic construct chromosome 2.
CP034523.1:161213115-161213129
ATTGCAGCAAAGAAGCACATTTATATTCTA161213115TTCATTGACAACATTAGCATATAATGCAAATTTACTTTGGAACTT
Eukaryotic synthetic construct chromosome 3.
CP034527.1:15229790-15229804
ATTGTAATAGCCAGAAATTGGAAACATATA15229790TTCATTGACAACATTTAAGATTATAATATAGTCATATAATAGTCC
Eukaryotic synthetic construct chromosome 3.
CP034527.1:84559845-84559859
TTGGTTTTGTATATATTAAATAGTTGAAAC84559845TTCATTGACAACATTAAGTTTGTTTTCTAGGCTCTATTGGGATAA
Eukaryotic synthetic construct chromosome 3.
CP034527.1:210776939-210776953
ATTGTAATAGCCAGAAATTGGAAACATATA210776939TTCATTGACAACATTTAAGATTATAATATAGTCATATAATAGTCC
Eukaryotic synthetic construct chromosome 4.
CP034528.1:16124651-16124665
AACGAAAGGCGTTTGAGGAAAGCCTGATAA16124651TTCATTGACAACATTACCATCAACCACACCTTACCATTCCTAGGA
Eukaryotic synthetic construct chromosome 4.
CP034528.1:63021140-63021154
TCTTCAAATATTTTACAGAGTTCAACTCTT63021140TTCATTGACAACATTATGACATTATGCTGATTGGATCCAGTGAGT
Eukaryotic synthetic construct chromosome 4.
CP034528.1:149823218-149823232
CAGAATATATTATCGCTTTAAACACAGATT149823218TTCATTGACAACATTTTGTGGGCACCCATTTAATATTAATATTAA
Eukaryotic synthetic construct chromosome 4.
CP034528.1:166712150-166712164
AAAAACGTCTGATTTTGTGTAACACTCCTT166712150TTCATTGACAACATTAAACAGCAATTAACTATTTGCTGATTACAT
Eukaryotic synthetic construct chromosome 4.
CP034528.1:204889498-204889512
AACGAAAGGCGTTTGAGGAAAGCCTGATAA204889498TTCATTGACAACATTACCATCAACCACACCTTACCATTCCTAGGA
Eukaryotic synthetic construct chromosome 6.
CP034530.1:62648216-62648230
CTATTTCAATCAACCATCTTGTAATCATAC62648216TTCATTGACAACATTTTACTCATACTATAATAAGTTGCTATTTCT
Eukaryotic synthetic construct chromosome 7.
CP034531.1:3553673-3553687
GTGGTGCCTGGCCTGAGTCAGCTCATTAGC3553673TTCATTGACAACATTGGTTCGTTCAACAAATATTGCCTGAGAAGA
Eukaryotic synthetic construct chromosome 7.
CP034531.1:160703102-160703116
GTGGTGCCTGGCCTGAGTCAGCTCATTAGC160703102TTCATTGACAACATTGGTTCGTTCAACAAATATTGCCTGAGAAGA
Eukaryotic synthetic construct chromosome 8.
CP034532.1:31346145-31346159
GTATTTTTAAATTCATCGATATTTCCACTT31346145TTCATTGACAACATTATTAAGTTTTATTGTGTCTCTTTTTTCAAA
Synthetic construct clone BS13637 ms(3)72Dt-PA (ms(3)72Dt) gene, complete cds.
KX804458.1:1058-1072
CGCGACGTGGACGGGCAGGATGTGCTGCTC1058TTCATTGACAACATTTTCCGTTTCACCCAGGCGGGATCGGAGGTG
Synthetic construct bacterial decoy, complete sequence.
MT169739.1:62491296-62491310
CATCTTGGCGTTTGTAAGTATCTTTGTTCT62491296TTCATTGACAACATTGACGACAGTCTTTGGTGCTGAAGTAACAAA
Eukaryotic synthetic construct chromosome 12.
CP034490.1:79441294-79441308
ATAAGATAGGTTTGTTCCAGAAGTTTAAAA79441294AATGTTGTCAATGAATTTGATAAAGTTTAATATTCACATTAAAAG
Eukaryotic synthetic construct chromosome 19.
CP034497.1:41338192-41338206
CTCCCTTAGGAGAGCTGTTAACATTATACT41338192AATGTTGTCAATGAAAAAGCTAAGATAGGCCAGGCATGGTGGCTC
Eukaryotic synthetic construct chromosome 2.
CP034498.1:197067860-197067874
AATGCCCCACATTTCATTAAGGGTGATGAC197067860AATGTTGTCAATGAAGAAGTTGCTTCTCATATAACTATACTGTCA
Eukaryotic synthetic construct chromosome 3.
CP034502.1:57174519-57174533
GCCTGTTTTTCATATGCATATGTAATAGGG57174519AATGTTGTCAATGAAAACACAATAGTATTTGGAGTGCAGCATAGT
Eukaryotic synthetic construct chromosome 3.
CP034502.1:97019322-97019336
AATTTGAATATTAATTTTAAAATTTATTCA97019322AATGTTGTCAATGAACATTGTCAGACATTTTGCAGCATTTCTTTA
Eukaryotic synthetic construct chromosome 5.
CP034504.1:9749503-9749517
GAGGGCCTTTCCAGCTCCAAAGTCGATGGC9749503AATGTTGTCAATGAAAGATCAACAGATCAGTGCATTATACCCAGG
Eukaryotic synthetic construct chromosome 5.
CP034504.1:188403322-188403336
GAGGGCCTTTCCAGCTCCAAAGTCGATGGC188403322AATGTTGTCAATGAAAGATCAACAGATCAGTGCATTATACCCAGG
Eukaryotic synthetic construct chromosome 7.
CP034506.1:34148561-34148575
TCTACAGATTTTGGATTTACCAGCCCCCAC34148561AATGTTGTCAATGAATTCCTTAAAATCTCTCTCTCTCTCTCTCTC
Eukaryotic synthetic construct chromosome 7.
CP034506.1:78341404-78341418
AACTAACACCCATAAAAGGTATGACTCTTT78341404AATGTTGTCAATGAAGATTTAACATAATATTCTATAACAAATATA
Eukaryotic synthetic construct chromosome 12.
CP034515.1:79441294-79441308
ATAAGATAGGTTTGTTCCAGAAGTTTAAAA79441294AATGTTGTCAATGAATTTGATAAAGTTTAATATTCACATTAAAAG
Eukaryotic synthetic construct chromosome 19.
CP034522.1:41338192-41338206
CTCCCTTAGGAGAGCTGTTAACATTATACT41338192AATGTTGTCAATGAAAAAGCTAAGATAGGCCAGGCATGGTGGCTC
Eukaryotic synthetic construct chromosome 2.
CP034523.1:197067860-197067874
AATGCCCCACATTTCATTAAGGGTGATGAC197067860AATGTTGTCAATGAAGAAGTTGCTTCTCATATAACTATACTGTCA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : http://gggenome.dbcls.jp/ddbj120syn/TTCATTGACAACATT
lang : en | db : ddbj120syn | k : 0 | strand : | nogap : | query_string : TTCATTGACAACATT | format : html | download : | debug :

0.007 | 0.007 | search_start;
0.084 | 0.077 | search_plus_done; http://172.18.8.73:27513/match?q=TTCATTGACAACATT&k=0&no_gap=0&offset=0&limit=50
0.109 | 0.025 | search_minus_done; http://172.18.8.73:27513/match?q=AATGTTGTCAATGAA&k=0&no_gap=0&offset=0&limit=12
0.116 | 0.007 | cgi_end;

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