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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2024-11-23 16:57:28, GGGenome : DDBJ release 134.0, MAM division (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Pteropus vampyrus clone CH279-375K22, complete sequence.
AC204458.3:16771-16785
CTCACCCAAAGGGTTGGGTAACAGGGAAAT16771TTCATTGACAACATTTGGGCAAAAGTATTTGGGGAGATGCCCTTT
Felis catus Senzu DNA, chromosome: B2, American Shorthair breed.
AP023156.1:81825232-81825246
GTTGGGGCCAGAGTTCCATCCAGAATTAAG81825232TTCATTGACAACATTCCCCTCACCACTCACTCTTTCCCAGACTTT
Ovis canadensis canadensis isolate 43U chromosome 2 sequence.
CP011887.1:195228141-195228155
TTTGTAATACATTTATCAAATAAAGGAGAA195228141TTCATTGACAACATTTACCCAAGTGAATTACAGGGTCAAAAATGC
Ovis canadensis canadensis isolate 43U chromosome 3 sequence.
CP011888.1:185504471-185504485
AAGAGAATTCCAGAAAACCATCTACTTCTC185504471TTCATTGACAACATTAAAACTTTTAGCTGTGTGGATCACAAGAAA
Ovis canadensis canadensis isolate 43U chromosome 4 sequence.
CP011889.1:7487058-7487072
TAAATGATCTGCCTTTTTTAGAGTAATCAT7487058TTCATTGACAACATTTCGAACACTTTGTAGCAAAAGAAAATAAAG
Ovis canadensis canadensis isolate 43U chromosome 4 sequence.
CP011889.1:74559753-74559767
ACTCCCCTAAATATAAGTCCCATTTCTCCT74559753TTCATTGACAACATTTCAAACAGTATATATCTTCTGTTTAAATTT
Ovis canadensis canadensis isolate 43U chromosome 6 sequence.
CP011891.1:95351025-95351039
GAATAATTAGAGATCTGAGATAACCTCTCG95351025TTCATTGACAACATTACTGTGGTTATGACAGTATTATTCTTTATA
Ovis canadensis canadensis isolate 43U chromosome 8 sequence.
CP011893.1:932378-932392
CCAGAGCTTCTGCTTCTGTCCTGAATTAGG932378TTCATTGACAACATTCCCTTCACCACCCTACTCTTTCTTATACTT
Ovis canadensis canadensis isolate 43U chromosome 23 sequence.
CP011908.1:24098996-24099010
TAGAAGTTCTTAATGTTTGTTTTCTTGGCT24098996TTCATTGACAACATTCCTTTTTGTTGTTGTGTGATCTCATCCGCT
Bos mutus isolate yakQH1 chromosome 4.
CP027072.1:7213012-7213026
TAAATGATCTGCCTTTTTTAAAGTAATCAT7213012TTCATTGACAACATTTCGAACACTTTGTAGCAAAAGAAAATAAAG
Bos mutus isolate yakQH1 chromosome 9.
CP027077.1:13850441-13850455
CCAGAGCTTCTGCTTCTATCCTGAATTAGG13850441TTCATTGACAACATTCCCTTCACCACCCTACTCTTTCTTATACTT
Bos mutus isolate yakQH1 chromosome 13.
CP027081.1:74532288-74532302
AGAAGTGTAATTACTGGGTCAGAATATGGA74532288TTCATTGACAACATTTGGGCTTGTTAAAAATTCAGGTTATTGAGT
Bos mutus isolate yakQH1 chromosome 19.
CP027087.1:22263363-22263377
CAGTGACTCCCCCTGACTCACTGCTTTAAA22263363TTCATTGACAACATTTTTTAAAAGGTAGAGAATTCTCATGAAAAG
Bos mutus isolate yakQH1 chromosome 24.
CP027092.1:23599102-23599116
TAGAAGTTCTTAATGTTTGTTTTCTTGGCT23599102TTCATTGACAACATTCCTTTTTGTGTGACCTCATCCACTACCAGC
Canis lupus familiaris breed Labrador retriever chromosome 15a.
CP050569.1:47157404-47157418
TAGAATATATTATCACTTTAAACACAGATT47157404TTCATTGACAACATTCTGTGGGCATCCATTTAATATTAATATTAA
Canis lupus familiaris breed Labrador retriever chromosome 20a.
CP050571.1:26006734-26006748
AGTCGACAACAAAAGCACTATCTGTGTTGT26006734TTCATTGACAACATTTCTGAAGTGGCCATTTATCTCTCACAGCAA
Canis lupus familiaris breed Labrador retriever chromosome 04a.
CP050572.1:18907897-18907911
AATAAATTGAAAAGGACAAAGAGAATTTCA18907897TTCATTGACAACATTTTGTAAAATTATTTTATTTATTTATTTTAC
Canis lupus familiaris breed Labrador retriever chromosome 02a.
CP050574.1:29563037-29563051
ATAATCAAAAATAACACTGCAACAGTGCAG29563037TTCATTGACAACATTTGCTTTCCAATCGTGCCAACTAAGAAAAAA
Canis lupus familiaris breed Labrador retriever chromosome 12a.
CP050578.1:36247219-36247233
ATTGAGGCCAGAGCTCCGTCCTGAATTAGG36247219TTCATTGACAACATTCCCTTACCACACTCTTTCTCAGACTTTAAG
Canis lupus familiaris breed Labrador retriever chromosome 33a.
CP050594.1:24913541-24913555
TTCTGAGAATTTAATGGAAAACATGATGAC24913541TTCATTGACAACATTGCAATGTATAATTGAAATTTGCTAAGAGAG
Canis lupus familiaris breed Labrador retriever chromosome 05a.
CP050595.1:75367501-75367515
AACTATGATTTTTTCCTTTGAAATCTATTT75367501TTCATTGACAACATTTATCCCTTATCTTCTCTCTCCAATTGTGAG
Canis lupus familiaris breed Labrador retriever chromosome 03a.
CP050599.1:17335517-17335531
CATGATCACAATCTGAGTCATGTAATTGAG17335517TTCATTGACAACATTTAAGTAATCCATAGCTCGTTTCCACTGTTC
Canis lupus familiaris breed Labrador retriever chromosome 02b.
CP050613.1:29585355-29585369
ATAATCAAAAATAACACTGCAACAGTGCAG29585355TTCATTGACAACATTTGCTTTCCAATCGTGCCAACTAAGAAAAAA
Canis lupus familiaris breed Labrador retriever chromosome 12b.
CP050616.1:36256894-36256908
ATTGAGGCCAGAGCTCCGTCCTGAATTAGG36256894TTCATTGACAACATTCCCTTACCACACTCTTTCTCAGACTTTAAG
Canis lupus familiaris breed Labrador retriever chromosome 33b.
CP050619.1:24901170-24901184
TTCTGAGAATTTAATGGAAAACATGATGAC24901170TTCATTGACAACATTGCAATGTATAATTGAAATTTGCTAAGAGAG
Canis lupus familiaris breed Labrador retriever chromosome 15b.
CP050620.1:47173247-47173261
TAGAATATATTATCACTTTAAACACAGATT47173247TTCATTGACAACATTCTGTGGGCATCCATTTAATATTAATATTAA
Canis lupus familiaris breed Labrador retriever chromosome 04b.
CP050625.1:18905620-18905634
AATAAATTGAAAAGGACAAAGAGAATTTCA18905620TTCATTGACAACATTTTGTAAAATTATTTTATTTATTTATTTTAC
Canis lupus familiaris breed Labrador retriever chromosome 03b.
CP050627.1:17310945-17310959
CATGATCACAATCTGAGTCATGTAATTGAG17310945TTCATTGACAACATTTAAGTAATCCATAGCTCGTTTCCACTGTTC
Canis lupus familiaris breed Labrador retriever chromosome 20b.
CP050631.1:25999722-25999736
AGTCGACAACAAAAGCACTATCTGTGTTGT25999722TTCATTGACAACATTTCTGAAGTGGCCATTTATCTCTCACAGCAA
Canis lupus familiaris breed Labrador retriever chromosome 05b.
CP050642.1:75365232-75365246
AACTATGATTTTTTCCTTTGAAATCTATTT75365232TTCATTGACAACATTTATCCCTTATCTTCTCTCTCCAATTGTGAG
Sus scrofa scrofa breed NS chromosome 2.
CP071553.1:104104540-104104554
GAAATAAAGGTCAGAGTTTAAGGAAATTGT104104540TTCATTGACAACATTAAATATTTACTAAATTTCAGCTTTTTCCCG
Sus scrofa scrofa breed NS chromosome 3.
CP071554.1:106216694-106216708
TCATGGAAATTATCTTTTCAAGTGATCAGA106216694TTCATTGACAACATTCACTTTGGAAGCCCATACCTCTCCCTTTCC
Sus scrofa scrofa breed NS chromosome 6.
CP071557.1:144155957-144155971
ATTAGGTAAAGCACTACTACGTAGGTCTGT144155957TTCATTGACAACATTCCAGATTCTGTTCTGCTGGGCTCTCACAAT
Sus scrofa scrofa breed NS chromosome 8.
CP071559.1:62105624-62105638
ACTTCCTGTCTGGATAGCTCCTTCTCTGGA62105624TTCATTGACAACATTTCCTTTTTTTGTTCACTAACCTTTCCACCA
Capricornis sumatraensis isolate serow.1 chromosome 3.
CP135628.1:126820339-126820353
TTTGTAATACATTTATCAAATAAAGGAGAA126820339TTCATTGACAACATTTACCCAAGTGAATTACATGGTCAAAAATTC
Capricornis sumatraensis isolate serow.1 chromosome 4.
CP135629.1:11170546-11170560
AGAGAATTCCAGAAAAACATCTACTTCTGC11170546TTCATTGACAACATTTAGAGCCTTTGACTGTGTGGATCACAACAA
Capricornis sumatraensis isolate serow.1 chromosome 4.
CP135629.1:124536438-124536452
AGAGAATTCCAGAAAACCATCTACTTCTGC124536438TTCATTGACAACATTAAAACTTTTAGCTGTGTGGATCACAAGAAA
Capricornis sumatraensis isolate serow.1 chromosome X.
CP135630.1:50002813-50002827
ATATGGGTTGAATAAATCAATGGTTACAAT50002813TTCATTGACAACATTAATCATTTTATTCAAGTTTTAAGAGTAAAT
Capricornis sumatraensis isolate serow.1 chromosome X.
CP135630.1:64089534-64089548
TTCTTTTCACATATAGACCAGATGTGCAGA64089534TTCATTGACAACATTTAAAAGACCAGCAACTCTTAATGCTGACGG
Capricornis sumatraensis isolate serow.1 chromosome 5.
CP135631.1:79253934-79253948
ACTCCCCTAAACATAAGTCCCATTTCTCCT79253934TTCATTGACAACATTTCAAACAGTATATGTCTTCTGTTTAAATTT
Capricornis sumatraensis isolate serow.1 chromosome 7.
CP135633.1:98068296-98068310
GAATAATTAGAGATCTGAGATAACCTCTAG98068296TTCATTGACAACATTACTGTGGTTATGACAGTATTATTCTTTATA
Capricornis sumatraensis isolate serow.1 chromosome 13.
CP135639.1:66297055-66297069
AAACATCTGTTAGCTAACATATACTTATGG66297055TTCATTGACAACATTCAAAAGTCACACAGGGGACAAGCTAATGAT
Capricornis sumatraensis isolate serow.1 chromosome 15.
CP135641.1:84917065-84917079
AGAAGTGTAATTACTGGGTCAGAGTATGGA84917065TTCATTGACAACATTTGGGCTTGTTACAAATTCAGATTATTGAGT
Sus scrofa BAC clone CHORI242_269D21_Contig29.
FN677168.1:27486-27500
ATTAGGTAAAGCACTACTACGTAGGTCTGT27486TTCATTGACAACATTCCAGATTCTGTTGTGCTGGGCTCTCACAAT
Canis lupus genome assembly, chromosome: 3.
HG994384.1:9071722-9071736
CATGATCACAATCTGAGTCATGTAATTGAG9071722TTCATTGACAACATTTAAGTAATCCATAGCTCGTTTCCACTGTTC
Canis lupus genome assembly, chromosome: 5.
HG994385.1:78386460-78386474
AACTATGATTTTTTCCTTTGAAATCTATTT78386460TTCATTGACAACATTTATCCCTTATCTTCTCTCTCCAATTGTGAG
Canis lupus genome assembly, chromosome: 4.
HG994386.1:18973684-18973698
AATAAATTGAAAAGGACAAAGAGAATTTCA18973684TTCATTGACAACATTTTGTAAAATTATTTTATTTATTTATTTTAC
Canis lupus genome assembly, chromosome: 2.
HG994387.1:33516046-33516060
ATAATCAAAAATAACACTGCAACAGTGCAG33516046TTCATTGACAACATTTGCTTTCCAATCGTGCCAACTAAGAAAAAA
Canis lupus genome assembly, chromosome: 12.
HG994392.1:37414734-37414748
ATTGAGGCCAGAGCTCCGTCCTGAATTAGG37414734TTCATTGACAACATTCCCTTACCACACTCTTTCTCAGACTTTAAG
Canis lupus genome assembly, chromosome: 15.
HG994395.1:48652344-48652358
TAGAATATATTATCACTTTAAACACAGATT48652344TTCATTGACAACATTCTGTGGGCATCCATTTAATATTAATATTAA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ddbj134mam/TTCATTGACAACATT
lang : en | db : ddbj134mam | k : 0 | strand : | nogap : | query_string : TTCATTGACAACATT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.086 | 0.078 | search_plus_done; http://172.18.8.138:50404/match?q=TTCATTGACAACATT&k=0&no_gap=0&offset=0&limit=50
0.125 | 0.039 | search_minus_done; http://172.18.8.138:50404/match?q=AATGTTGTCAATGAA&k=0&no_gap=0&offset=0&limit=0
0.125 | 0.000 | cgi_end;

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