GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2024-11-21 23:58:43, GGGenome : D. melanogaster genome, BDGP Release 6 + ISO1 MT/dm6 (Aug, 2014)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

chr3R:30995778-30995792
TGTTGCGGTGCGCGTACGTGGCGTATACGC30995778AATGTTGTCAATGAACCTGCACGGATTATTGGCATTAAGTAAGCC
chrX:1147120-1147134
CTCTTTAAAATCCCATTAATCCTCTTATTA1147120AATGTTGTCAATGAACGGCTCTTTAGGCTTGATAGATTATTTAAC
chr3L:16099164-16099178
CGCGACGTGGACGGGCAGGATGTGCTGCTC16099164TTCATTGACAACATTTTCCGTTTCACCCAGGCGGGATCGGAGGTG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/dm6/AATGTTGTCAATGAA
lang : en | db : dm6 | k : 0 | strand : | nogap : | query_string : AATGTTGTCAATGAA | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.078 | 0.070 | search_plus_done; http://172.18.8.76:28098/match?q=AATGTTGTCAATGAA&k=0&no_gap=0&offset=0&limit=50
0.082 | 0.003 | search_minus_done; http://172.18.8.76:28098/match?q=TTCATTGACAACATT&k=0&no_gap=0&offset=0&limit=48
0.082 | 0.000 | cgi_end;

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