GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2024-12-28 20:35:24, GGGenome : Amborella trichopoda genome, AMTR1.0 (Jan, 2014)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

AmTr_v1.0_scaffold00023 dna:supercontig supercontig:GCA_000471905.1:AmTr_v1.0_scaffold00023:1:6666511:1
position: 6441007-6441021
TCTAGAGTGAATGCGTTTTTGGGTAATAAT6441007AATGTTGTCAATGAACATACGGTCTCTAATAAAAGCTGATTGTTC
AmTr_v1.0_scaffold00006 dna:supercontig supercontig:GCA_000471905.1:AmTr_v1.0_scaffold00006:1:9414115:1
position: 604353-604367
TAATGGAGGGCATACTTGGGTGAAACGGAA604353AATGTTGTCAATGAAGAGAAGCACATCTTGGCCTTCAGCATCTCT
AmTr_v1.0_scaffold00357 dna:supercontig supercontig:GCA_000471905.1:AmTr_v1.0_scaffold00357:1:33638:1
position: 17547-17561
TTTTTTTAGATTTTTTAGAATTTTTTGATA17547TTCATTGACAACATTGGGATGAAGCACTCAGATCTGGACCGCATA
AmTr_v1.0_scaffold00224 dna:supercontig supercontig:GCA_000471905.1:AmTr_v1.0_scaffold00224:1:181452:1
position: 18032-18046
TTTTTTTAGATTTTTTAGAATTTTTTGATA18032TTCATTGACAACATTAGGATGAAGCACTCAGATCTGGACCGCATT
AmTr_v1.0_scaffold00038 dna:supercontig supercontig:GCA_000471905.1:AmTr_v1.0_scaffold00038:1:5499001:1
position: 2277722-2277736
TCTAAACTATAATCTAGTTCATTATTAACA2277722TTCATTGACAACATTGAAAGGAACAAATCCTTATAAGTCAAAAAA
AmTr_v1.0_scaffold00028 dna:supercontig supercontig:GCA_000471905.1:AmTr_v1.0_scaffold00028:1:6207899:1
position: 3227022-3227036
TATTTCATATCCTCAGCAATATGGACAATG3227022TTCATTGACAACATTATGACATCTTCTGACATATGCTAGGTTGCA
AmTr_v1.0_scaffold00007 dna:supercontig supercontig:GCA_000471905.1:AmTr_v1.0_scaffold00007:1:9499498:1
position: 4774026-4774040
GCCGACTTAGGTCATTTCCTGACCACGCAA4774026TTCATTGACAACATTTGCCTCTAGCCTCAATGATTCGTTGAATAT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/AMTR1.0/AATGTTGTCAATGAA
lang : en | db : AMTR1.0 | k : 0 | strand : | nogap : | query_string : AATGTTGTCAATGAA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.080 | 0.072 | search_plus_done; http://172.18.8.75:28167/match?q=AATGTTGTCAATGAA&k=0&no_gap=0&offset=0&limit=50
0.086 | 0.005 | search_minus_done; http://172.18.8.75:28167/match?q=TTCATTGACAACATT&k=0&no_gap=0&offset=0&limit=48
0.089 | 0.003 | cgi_end;

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