GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2024-12-29 10:32:06, GGGenome : Amborella trichopoda genome, AMTR1.0 (Jan, 2014)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

AmTr_v1.0_scaffold00023 dna:supercontig supercontig:GCA_000471905.1:AmTr_v1.0_scaffold00023:1:6666511:1
position: 6441007-6441021
TCTAGAGTGAATGCGTTTTTGGGTAATAAT6441007AATGTTGTCAATGAACATACGGTCTCTAATAAAAGCTGATTGTTC
AmTr_v1.0_scaffold00006 dna:supercontig supercontig:GCA_000471905.1:AmTr_v1.0_scaffold00006:1:9414115:1
position: 604353-604367
TAATGGAGGGCATACTTGGGTGAAACGGAA604353AATGTTGTCAATGAAGAGAAGCACATCTTGGCCTTCAGCATCTCT
AmTr_v1.0_scaffold00357 dna:supercontig supercontig:GCA_000471905.1:AmTr_v1.0_scaffold00357:1:33638:1
position: 17547-17561
TTTTTTTAGATTTTTTAGAATTTTTTGATA17547TTCATTGACAACATTGGGATGAAGCACTCAGATCTGGACCGCATA
AmTr_v1.0_scaffold00224 dna:supercontig supercontig:GCA_000471905.1:AmTr_v1.0_scaffold00224:1:181452:1
position: 18032-18046
TTTTTTTAGATTTTTTAGAATTTTTTGATA18032TTCATTGACAACATTAGGATGAAGCACTCAGATCTGGACCGCATT
AmTr_v1.0_scaffold00038 dna:supercontig supercontig:GCA_000471905.1:AmTr_v1.0_scaffold00038:1:5499001:1
position: 2277722-2277736
TCTAAACTATAATCTAGTTCATTATTAACA2277722TTCATTGACAACATTGAAAGGAACAAATCCTTATAAGTCAAAAAA
AmTr_v1.0_scaffold00028 dna:supercontig supercontig:GCA_000471905.1:AmTr_v1.0_scaffold00028:1:6207899:1
position: 3227022-3227036
TATTTCATATCCTCAGCAATATGGACAATG3227022TTCATTGACAACATTATGACATCTTCTGACATATGCTAGGTTGCA
AmTr_v1.0_scaffold00007 dna:supercontig supercontig:GCA_000471905.1:AmTr_v1.0_scaffold00007:1:9499498:1
position: 4774026-4774040
GCCGACTTAGGTCATTTCCTGACCACGCAA4774026TTCATTGACAACATTTGCCTCTAGCCTCAATGATTCGTTGAATAT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/AMTR1.0/AATGTTGTCAATGAA
lang : ja | db : AMTR1.0 | k : 0 | strand : | nogap : | query_string : AATGTTGTCAATGAA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.081 | 0.073 | search_plus_done; http://172.18.8.75:28167/match?q=AATGTTGTCAATGAA&k=0&no_gap=0&offset=0&limit=50
0.087 | 0.005 | search_minus_done; http://172.18.8.75:28167/match?q=TTCATTGACAACATT&k=0&no_gap=0&offset=0&limit=48
0.090 | 0.003 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).