GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2024-11-22 10:44:10, GGGenome : Aedes aegypti genome, AaegL5 (Jun, 2017)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

3 dna:chromosome chromosome:AaegL5:3:1:409777670:1
position: 81313995-81314009
CGTGATCAGGAAGGACAGGATGTGCTGCTC81313995TTCATTGACAACATTTTCCGTTTCACCCAAGCTGGTTCTGAGGTA
3 dna:chromosome chromosome:AaegL5:3:1:409777670:1
position: 124229433-124229447
TTGATAGCGTTCATAAACAGCAAACTTGTG124229433TTCATTGACAACATTAAAAAGTTGCAAATTTTTTGTCCAATATTG
3 dna:chromosome chromosome:AaegL5:3:1:409777670:1
position: 207881460-207881474
TATATATATATATATAACTGCTTATCATTA207881460TTCATTGACAACATTCAGTGTGAGTGTCCAGAACCTTTATTTAAC
3 dna:chromosome chromosome:AaegL5:3:1:409777670:1
position: 235252143-235252157
CGCGATCAAGAGGGACAGGATGTGCTGCTC235252143TTCATTGACAACATTTTCCGTTTCACCCAGGCCGGTTCCGAGGTA
3 dna:chromosome chromosome:AaegL5:3:1:409777670:1
position: 394986751-394986765
AAAAGTGCATCGAAAATACTGCGTTCAATT394986751TTCATTGACAACATTTGCAGAGATCTTTGAACTGCTTTGGCCGTT
1 dna:chromosome chromosome:AaegL5:1:1:310827022:1
position: 232097759-232097773
ATGATCAAAAAACAATAACTGATCGATGTT232097759TTCATTGACAACATTTACAGGATGAAACCTAAAGGTGCTAAAAAG
1 dna:chromosome chromosome:AaegL5:1:1:310827022:1
position: 235292527-235292541
CAACTAGGAATCCGCAGAGTATAACAAAGG235292527TTCATTGACAACATTTGACCTTACATCACGATTCTACAACAAAAG
2 dna:chromosome chromosome:AaegL5:2:1:474425716:1
position: 34797470-34797484
ATTCTCGATAATCTTCAATTACTGCTGTTT34797470AATGTTGTCAATGAAAGTTGGTAATGATTACGATTCCGTACAATT
2 dna:chromosome chromosome:AaegL5:2:1:474425716:1
position: 380510979-380510993
CTTTTTAGCACCTTTTGGTTTCATCCTGTA380510979AATGTTGTCAATGAAAACATCGATTAGTTATTATTTTTTGATCAA
3 dna:chromosome chromosome:AaegL5:3:1:409777670:1
position: 105612570-105612584
CAAACATTCAAATATCGGTAATGATCTTTA105612570AATGTTGTCAATGAAAAACTGAAATTAGGTGTTTTGAAAGTTGTT
3 dna:chromosome chromosome:AaegL5:3:1:409777670:1
position: 186972577-186972591
TGAAGAGTTCCTGCCCAATGCAATGTTGAA186972577AATGTTGTCAATGAAATACCTGAACAAATCCCTACAAAAATCTTT
3 dna:chromosome chromosome:AaegL5:3:1:409777670:1
position: 309414484-309414498
TGCCAAAAATCTTTGGAATATCATGATAAT309414484AATGTTGTCAATGAAGTTGAATAGTGGCCGTTCATTAATAAAGTA
NIGP01001185 dna:scaffold scaffold:AaegL5:NIGP01001185:1:16632:1
position: 16474-16488
TACCTCAGAACCAGCTTGGGTGAAACGGAA16474AATGTTGTCAATGAAGAGCAGCACATCCTGTCCTTCCTGATCACG

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/AaegL5/TTCATTGACAACATT
lang : ja | db : AaegL5 | k : 0 | strand : | nogap : | query_string : TTCATTGACAACATT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.081 | 0.072 | search_plus_done; http://172.18.8.72:28000/match?q=TTCATTGACAACATT&k=0&no_gap=0&offset=0&limit=50
0.089 | 0.008 | search_minus_done; http://172.18.8.72:28000/match?q=AATGTTGTCAATGAA&k=0&no_gap=0&offset=0&limit=43
0.093 | 0.004 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).