GGGenome | Results

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2025-04-08 17:02:30, GGGenome : Cucurbita moschata (Rifu) genome, v1

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Cmo_Chr00
position: 6987489-6987503

TAATTTATACGCGCCTGCGGCCATCATCAT6987489TTCATTGACAACATTCATTATCAGATAGTCGGACAATCCATCAAC

Cmo_Chr00
position: 16578829-16578843

TAATTTAGACGCGCCTGCAGCCATCATCAT16578829TTCATTGACAACATTCATTATCAGATAGTCAGACAATCCATCGAT

Cmo_Chr00
position: 16735467-16735481

TAATTTATACGCGCCTGCAACCATCATCAT16735467TTCATTGACAACATTCATTATCAGATAGTCAGACAATCCATCGAT

Cmo_Chr09
position: 8760045-8760059

TAATTTATACGCGCCTGCGACCATCATCAT8760045TTCATTGACAACATTCATTATCAGATAGTCGGACAATCCATCGAT

Cmo_Chr09
position: 9767005-9767019

TAATTTATACGCACCTGCGGCCATCATCAT9767005TTCATTGACAACATTCATTATCAGATAGTCGAAAATCCATCGATA

Cmo_Chr09
position: 9897044-9897058

TAATTTATACGCGCCTGCGGCCATCATCAT9897044TTCATTGACAACATTCATTATCAGATAGTTGGAAATCCATCATCA

Cmo_Chr09
position: 10108484-10108498

TAATTTATACGCGCCTGTGGCCATCATCAT10108484TTCATTGACAACATTCATTATCAGATAGTCGGATAATCCATCAAT

Cmo_Chr10
position: 8157680-8157694

TAATTTATACGCGCCTGCGGCCATCATCAT8157680TTCATTGACAACATTCATTATCAGATAGTCAGACAATCCATCGAT

Cmo_Chr11
position: 7527521-7527535

TAATTTATACGTGCCTGCAGTCATCATCAT7527521TTCATTGACAACATTCATTATCAGATAGTCGGACAATACATTGAT

Cmo_Chr12
position: 5334916-5334930

TAATTTATACGCGCCTGCAGTCATCATCAT5334916TTCATTGACAACATTCATTATCAGATAGTTAGACAATCCATCGAT

Cmo_Chr14
position: 6374168-6374182

TAATTTATACGTGCCTGCGGCCATCATCAT6374168TTCATTGACAACATTCATTACCAGATAGTCGGACAATCCATCGAT

Cmo_Chr14
position: 6796024-6796038

TAATTTATACGCGCCTGTGGCCATCATCAT6796024TTCATTGACAACATTCATTATCAGATAGTCAGACAATCCATTGAT

Cmo_Chr18
position: 4838120-4838134

AAGGAATGTCTAAACATGTTTGTTATCGTG4838120TTCATTGACAACATTCTAATATACTTGAAAATGGATCAAGAACAC

Cmo_Chr20
position: 8276356-8276370

TAATTTATACGCGCCTGCAGCCATCATCAT8276356TTCATTGACAACATTCATTATCAGATAGTCAGACAATCCATCAAT

Cmo_Chr00
position: 6076724-6076738

ATCGATGGATTGTCCGACTATCTGATAATG6076724AATGTTGTCAATGAAATGATGATGGCCGCAGGCGCGTATAAATTA

Cmo_Chr00
position: 6165231-6165245

ATCGATGGATTATCAGACTGTTTGATAATG6165231AATGTTGTCAATGAAATGATGATGGTTGCTGGTGCGTATAAAATA

Cmo_Chr00
position: 16581816-16581830

ATCGATGGATTGTCTGACTATCTGATAATG16581816AATGTTGTCAATGAAATGATGATGGCTGCAGACGCGTCTAAATTA

Cmo_Chr00
position: 18719386-18719400

ATCGATGGATTGTCTGACTATCTGATAATG18719386AATGTTGTCAATGAAATGATGATGGTTGCAGGCGCGTATAAATTA

Cmo_Chr00
position: 19887776-19887790

ATCGATGGATTGTCTGACTATCTGATAATG19887776AATGTTGTCAATGAAATGATGATGGTTGCAGGCGCGTATAAATTA

Cmo_Chr05
position: 6342073-6342087

ATCGATAGATTGTCCGACTATCTAATATTG6342073AATGTTGTCAATGAAATGATGATGGCCGCAAGCGCGTATAAATTA

Cmo_Chr05
position: 10540825-10540839

CCTCTCCAACCGATGCAGGATCTCACAAAA10540825AATGTTGTCAATGAAAATTTTTTGTTCGGGTAGTAGCCCTTATGG

Cmo_Chr08
position: 4849854-4849868

TGCCATCTACATGCTACTATTTTCAAACAC4849854AATGTTGTCAATGAAAGGCAAAGAATTCATCTCCTAGAGTATTGC

Cmo_Chr13
position: 3620873-3620887

ATTGATGGATTGTCTGACTATCTTATAATG3620873AATGTTGTCAATGAAATGATGATGGCTGCAGGCGCGTATAAATTA

Cmo_Chr13
position: 3857393-3857407

ATTGATGGATTGTCTGACTATCTTATAATG3857393AATGTTGTCAATGAAATGATGATGGCTGCAGGCGCGTATAAATTA

Cmo_Chr15
position: 6665157-6665171

ATCGATGGATTGTCTGACTATCTGATAATG6665157AATGTTGTCAATGAAATGATGATGGTCGCAGGCGCGTATAAATTA

Cmo_Chr17
position: 4863321-4863335

ATCGATGGATTGTCTGACTATCTGATAATG4863321AATGTTGTCAATGAAATGGTGATGGCGTAGGCGCGTATAAATTAC

Cmo_Chr20
position: 8279477-8279491

ATCGATGGATTGTCTGACTATCTGATAATG8279477AATGTTGTCAATGAAATGATGATGGCTGCAGGCGCGTATAAATTA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

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Debug Info:

0.009 | 0.009 | search_start;
0.080 | 0.072 | search_plus_done; http://172.18.8.72:28207/match?q=TTCATTGACAACATT&k=0&no_gap=0&offset=0&limit=50
0.093 | 0.013 | search_minus_done; http://172.18.8.72:28207/match?q=AATGTTGTCAATGAA&k=0&no_gap=0&offset=0&limit=36
0.102 | 0.008 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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