GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2024-11-22 08:45:15, GGGenome : Helobdella robusta genome, Helro1 (Dec, 2012)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

HELROscaffold_88 dna:supercontig supercontig:GCA_000326865.1:HELROscaffold_88:1:565942:1
position: 193193-193207
TTTGAATTGGTGTTATCATCTTTAGCGAAA193193TTCATTGACAACATTTTTGTCTACAACGTCAACAACAACATCAAC
HELROscaffold_20 dna:supercontig supercontig:GCA_000326865.1:HELROscaffold_20:1:3090232:1
position: 1054722-1054736
CAACTATGAAGACAAGATAAGACAAGATGT1054722TTCATTGACAACATTGCACCACCATATGTCCTACTTAAAATGCTA
HELROscaffold_15 dna:supercontig supercontig:GCA_000326865.1:HELROscaffold_15:1:4003280:1
position: 501161-501175
GTTTCCACAAGCTTTTTGGAGTTTACTGTT501161TTCATTGACAACATTCTTCCAATATACTTTATGTTTGTTTGAATG
HELROscaffold_8 dna:supercontig supercontig:GCA_000326865.1:HELROscaffold_8:1:5907480:1
position: 4806930-4806944
TACTCACAATTTCTGAATTTCTAATGTTCA4806930TTCATTGACAACATTTTCAGACATACATTGGGCCGGTGTTGATAT
HELROscaffold_1 dna:supercontig supercontig:GCA_000326865.1:HELROscaffold_1:1:13640604:1
position: 6665435-6665449
TTTTTACATTAACATCTTTAAACAATGTAA6665435AATGTTGTCAATGAATTATAAAACCACTCAGTCAACCAACTGGTA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/Helro1/TTCATTGACAACATT
lang : en | db : Helro1 | k : 0 | strand : | nogap : | query_string : TTCATTGACAACATT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.081 | 0.072 | search_plus_done; http://172.18.8.76:28146/match?q=TTCATTGACAACATT&k=0&no_gap=0&offset=0&limit=50
0.086 | 0.006 | search_minus_done; http://172.18.8.76:28146/match?q=AATGTTGTCAATGAA&k=0&no_gap=0&offset=0&limit=46
0.087 | 0.001 | cgi_end;

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