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2025-04-08 12:27:39, GGGenome : Helobdella robusta genome, Helro1 (Dec, 2012)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

HELROscaffold_88 dna:supercontig supercontig:GCA_000326865.1:HELROscaffold_88:1:565942:1
position: 193193-193207

TTTGAATTGGTGTTATCATCTTTAGCGAAA193193TTCATTGACAACATTTTTGTCTACAACGTCAACAACAACATCAAC

HELROscaffold_20 dna:supercontig supercontig:GCA_000326865.1:HELROscaffold_20:1:3090232:1
position: 1054722-1054736

CAACTATGAAGACAAGATAAGACAAGATGT1054722TTCATTGACAACATTGCACCACCATATGTCCTACTTAAAATGCTA

HELROscaffold_15 dna:supercontig supercontig:GCA_000326865.1:HELROscaffold_15:1:4003280:1
position: 501161-501175

GTTTCCACAAGCTTTTTGGAGTTTACTGTT501161TTCATTGACAACATTCTTCCAATATACTTTATGTTTGTTTGAATG

HELROscaffold_8 dna:supercontig supercontig:GCA_000326865.1:HELROscaffold_8:1:5907480:1
position: 4806930-4806944

TACTCACAATTTCTGAATTTCTAATGTTCA4806930TTCATTGACAACATTTTCAGACATACATTGGGCCGGTGTTGATAT

HELROscaffold_1 dna:supercontig supercontig:GCA_000326865.1:HELROscaffold_1:1:13640604:1
position: 6665435-6665449

TTTTTACATTAACATCTTTAAACAATGTAA6665435AATGTTGTCAATGAATTATAAAACCACTCAGTCAACCAACTGGTA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Tab-delimited text: Open in new window | Download
You can copy-paste the result into spreadsheet softwares (e.g. Excel) or text editors.
CSV format: Open in new window | Download
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BED format: Link | Download
GFF format: Link | Download
JSON format: Link | Download

Debug Info:

0.009 | 0.009 | search_start;
0.084 | 0.075 | search_plus_done; http://172.18.8.76:28146/match?q=TTCATTGACAACATT&k=0&no_gap=0&offset=0&limit=50
0.091 | 0.007 | search_minus_done; http://172.18.8.76:28146/match?q=AATGTTGTCAATGAA&k=0&no_gap=0&offset=0&limit=46
0.091 | 0.001 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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