GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2024-11-24 05:56:58, GGGenome : Hordeum vulgare genome, 082214v1 (Mar, 2012)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

4 dna:chromosome chromosome:082214v1:4:1:544168226:1
position: 281534574-281534588
TGATGCACCGCTAAGTGTGCCACCCCCTCC281534574AATGTTGTCAATGAACATTTTGAATGTGTGGCAGGCATGGTCTGA
1 dna:chromosome chromosome:082214v1:1:1:464124043:1
position: 152251787-152251801
GCATCCAAATAGGCAGAAACTTAGGAGAAT152251787TTCATTGACAACATTGAAGAAAGGGATAGAGCTGGTTTTTAGTAT
3 dna:chromosome chromosome:082214v1:3:1:564427874:1
position: 15026981-15026995
CCCATAGTTTTTTAACAACAACATATTTTT15026981TTCATTGACAACATTTTACACAGAGTATTGTGAAATGTCTCACAC
3 dna:chromosome chromosome:082214v1:3:1:564427874:1
position: 418615933-418615947
CGCTATGTAATGAGCTCCAACAATATTTTA418615933TTCATTGACAACATTTAGAGCCCATTTGGGACAGCTCTGCTCCTT
5 dna:chromosome chromosome:082214v1:5:1:561411686:1
position: 119548036-119548050
TTTGGCTCAGGTTTACCCTCTTGCCTATTT119548036TTCATTGACAACATTTGTCAGTATATCGCTTCTAATTTTACTCAG

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/Horvu_v1/AATGTTGTCAATGAA
lang : ja | db : Horvu_v1 | k : 0 | strand : | nogap : | query_string : AATGTTGTCAATGAA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.078 | 0.070 | search_plus_done; http://172.18.8.75:28177/match?q=AATGTTGTCAATGAA&k=0&no_gap=0&offset=0&limit=50
0.082 | 0.004 | search_minus_done; http://172.18.8.75:28177/match?q=TTCATTGACAACATT&k=0&no_gap=0&offset=0&limit=49
0.085 | 0.003 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).