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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2024-11-22 18:41:46, GGGenome : Ixodes scapularis genome, IscaW1 (Aug, 2007)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

DS706139 dna:scaffold scaffold:IscaW1:DS706139:1:1219:1
position: 15-29
ACTTTCTCCTTTCC15TTCATTGACAACATTAAAAGCTTTGGGGGCAGTTTTATAGTTTGT
DS658723 dna:scaffold scaffold:IscaW1:DS658723:1:83960:1
position: 20524-20538
GTGATATATTTTTTTTATTTTCTTTATAAT20524TTCATTGACAACATTTTTAGACCCTGTACACGGAAGAGTTGTTGA
DS645981 dna:scaffold scaffold:IscaW1:DS645981:1:95347:1
position: 34782-34796
AACATGTCTTTATCTGCACTAACTTAAAAG34782TTCATTGACAACATTTAAGTAATTAAGCGACTTATTTTGAGGATT
DS915257 dna:scaffold scaffold:IscaW1:DS915257:1:308778:1
position: 70203-70217
GGGGTTTCATATCATTTTGTCGAAACACAT70203TTCATTGACAACATTTTATTGACACAAGTTTTATTGATGCTCATG
DS979414 dna:scaffold scaffold:IscaW1:DS979414:1:577972:1
position: 325020-325034
ATTCAAATGAACCTGACGACGTGTCTCGGA325020TTCATTGACAACATTTTAAGTTCTCAAAGACTCAAGAAAACAAAG
DS745361 dna:scaffold scaffold:IscaW1:DS745361:1:1312:1
position: 581-595
CTTTTTCGAGGTTGAAAAATACAGATAGGC581AATGTTGTCAATGAACGAAGGCCTCACGCACGACTGTCTCCAGCC
DS662895 dna:scaffold scaffold:IscaW1:DS662895:1:1347:1
position: 971-985
CCTGCGGTGGCACGAAACTGACGCATCAGT971AATGTTGTCAATGAAACGTTAAGGCCATTTACCTACAGAGCTACG
DS815768 dna:scaffold scaffold:IscaW1:DS815768:1:1992:1
position: 1233-1247
CACTGGCGGATACCATAATGCGGGGCAACA1233AATGTTGTCAATGAATACAAAAACGCCATTCGAGGCAGACGAGAA
DS678110 dna:scaffold scaffold:IscaW1:DS678110:1:15835:1
position: 13555-13569
TCATTTATCCGACAGAATTTGCGCGCACTC13555AATGTTGTCAATGAACGTGGACGAGCGCCCGGTTCCTTCTTTGTG
DS748247 dna:scaffold scaffold:IscaW1:DS748247:1:215944:1
position: 174670-174684
CAAACTATAAAACTGCCCCCAAAGGTTTTT174670AATGTTGTCAATGAAGGAAAGGAGAAAGTTGTTAAATGGAAAGAG
DS886620 dna:scaffold scaffold:IscaW1:DS886620:1:290085:1
position: 99817-99831
TCTTTTTTACAATTAAAACTGAAAAAAACT99817AATGTTGTCAATGAAGCTTCGCAGAACTAGATGGTATGGGACTCC
DS960430 dna:scaffold scaffold:IscaW1:DS960430:1:472160:1
position: 470102-470116
GACGATTTTTCTTAGATATTTTGTGGAATA470102AATGTTGTCAATGAAATATCAAAATTCTAGTTGATTTGCCTTTTA
DS825893 dna:scaffold scaffold:IscaW1:DS825893:1:574972:1
position: 424356-424370
TCGCTTTGCGTTACGTGACGTCAGGGCTTC424356AATGTTGTCAATGAATGTACCATTTATGCTAAAATGCGATTGGAG

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/IscaW1/TTCATTGACAACATT
lang : ja | db : IscaW1 | k : 0 | strand : | nogap : | query_string : TTCATTGACAACATT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.082 | 0.073 | search_plus_done; http://172.18.8.76:28147/match?q=TTCATTGACAACATT&k=0&no_gap=0&offset=0&limit=50
0.091 | 0.009 | search_minus_done; http://172.18.8.76:28147/match?q=AATGTTGTCAATGAA&k=0&no_gap=0&offset=0&limit=45
0.096 | 0.005 | cgi_end;

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