GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2024-11-22 10:02:43, GGGenome : Manihot esculenta genome, v6.1

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Chromosome12:27849680-27849694
ATAGAAAATTGTTGTATGTATGTTGTGTGA27849680AATGTTGTCAATGAATAAGGAAGCAAAGAAATTAAATAAAGTAAA
Chromosome16:5868373-5868387
TTCTATATTTAGTAGGTTTTTCACTTTAAT5868373AATGTTGTCAATGAACAATTTCTTTTTGTGTTTTTTTTTTTTTAA
Chromosome10:23532639-23532653
CAATGTTTCTCTTTCTGTTCGAGAAGATTA23532639TTCATTGACAACATTCCATAAGTAGAAAGAAAATGTCAAACTCTT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/Mesculenta_v6/AATGTTGTCAATGAA
lang : en | db : Mesculenta_v6 | k : 0 | strand : | nogap : | query_string : AATGTTGTCAATGAA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.081 | 0.072 | search_plus_done; http://172.18.8.74:28304/match?q=AATGTTGTCAATGAA&k=0&no_gap=0&offset=0&limit=50
0.086 | 0.005 | search_minus_done; http://172.18.8.74:28304/match?q=TTCATTGACAACATT&k=0&no_gap=0&offset=0&limit=48
0.086 | 0.001 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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