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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2024-11-14 15:54:45, GGGenome : Oryza glumaepatula genome, ALNU02000000 (Aug, 2013)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

2 dna:chromosome chromosome:ALNU02000000:2:1:38039368:1
position: 32437973-32437987
GAGCAAGCCATGAATCGGTACAAACAAGAG32437973AATGTTGTCAATGAACAGGTCTTATCCACACGTCGGACATCAGGA
5 dna:chromosome chromosome:ALNU02000000:5:1:30429317:1
position: 8278751-8278765
TATGATTGAGCACCCCTACCTACTTTGCAA8278751AATGTTGTCAATGAACTGTTTGTTCGCTACATAAACGTTCAATGA
5 dna:chromosome chromosome:ALNU02000000:5:1:30429317:1
position: 28081757-28081771
TCTTGCATAAATTACCTGAGTGAAACGGAA28081757AATGTTGTCAATGAACAAAAGCACATCTTGTCCTTCGGCATCACG
3 dna:chromosome chromosome:ALNU02000000:3:1:37594838:1
position: 9818819-9818833
TGATCCCAATAGTTGTTTATTTTTGGACTC9818819TTCATTGACAACATTGCCACTTTGATGACTGTTCTGACATGAATG
3 dna:chromosome chromosome:ALNU02000000:3:1:37594838:1
position: 25905913-25905927
TACATGTGCACTTTGCAGCTGCCTAAAACA25905913TTCATTGACAACATTGATAGGGAAAAGAGGCATTGCTTATGGAGG
7 dna:chromosome chromosome:ALNU02000000:7:1:28350858:1
position: 11925477-11925491
CGTGTGCCTCCTGGATGCACCAATCGGCTG11925477TTCATTGACAACATTTTGTTGAAGGACCTTGGCAACATCTTTTTG
7 dna:chromosome chromosome:ALNU02000000:7:1:28350858:1
position: 23192142-23192156
AGATCTATCTAATTTAGGTGTAGTGCTCTC23192142TTCATTGACAACATTTTTCACTTCCTGCGTTAGGTTTCCATTATC
9 dna:chromosome chromosome:ALNU02000000:9:1:23490084:1
position: 16020923-16020937
CTTTCAAATGATGGTCAAACTAATTATAAA16020923TTCATTGACAACATTAACTAAACGAGTGAAGAGTGAAGAGAAGAT
10 dna:chromosome chromosome:ALNU02000000:10:1:22967634:1
position: 2572866-2572880
ACAAATATATTCACAATATTGATTCATAGG2572866TTCATTGACAACATTGAGTCACATACTCATTCACAACATCACAGA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/Orygl/AATGTTGTCAATGAA
lang : ja | db : Orygl | k : 0 | strand : | nogap : | query_string : AATGTTGTCAATGAA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.084 | 0.075 | search_plus_done; http://172.18.8.75:28184/match?q=AATGTTGTCAATGAA&k=0&no_gap=0&offset=0&limit=50
0.090 | 0.006 | search_minus_done; http://172.18.8.75:28184/match?q=TTCATTGACAACATT&k=0&no_gap=0&offset=0&limit=47
0.093 | 0.004 | cgi_end;

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