GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2024-11-22 10:08:31, GGGenome : Rhodnius prolixus genome, RproC1 (Dec, 2010)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

GL562992 dna:supercontig supercontig:RproC1:GL562992:1:1757953:1
position: 813942-813956
ATCAGCATGTACCCAATATTTCATTCATAC813942TTCATTGACAACATTTAGGTAATTTTATTGCGTTAAGATTAAGAA
GL547163 dna:supercontig supercontig:RproC1:GL547163:1:14033:1
position: 9929-9943
GTGAAATAAGAATAATAGCTAAATGTAATC9929AATGTTGTCAATGAATAATTTTATAACCATTACTTCTTTTGAAAA
GL563051 dna:supercontig supercontig:RproC1:GL563051:1:2063577:1
position: 366113-366127
AAAGAACTAACTTATTCTTACATCGTCAGT366113AATGTTGTCAATGAAATATTGAATTACAGCTTGCGGCTCTAAATT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/RproC1/TTCATTGACAACATT
lang : en | db : RproC1 | k : 0 | strand : | nogap : | query_string : TTCATTGACAACATT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.080 | 0.072 | search_plus_done; http://172.18.8.76:28157/match?q=TTCATTGACAACATT&k=0&no_gap=0&offset=0&limit=50
0.085 | 0.005 | search_minus_done; http://172.18.8.76:28157/match?q=AATGTTGTCAATGAA&k=0&no_gap=0&offset=0&limit=49
0.086 | 0.001 | cgi_end;

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