GGGenome | Results

データベース：

ミスマッチ/ギャップを許容ミスマッチのみ許容：塩基まで (検索する配列長の25%まで)
双方向を検索＋方向のみ検索－方向のみ検索

2024-11-22 09:31:29, GGGenome : Rabbit pre-spliced RNA, RefSeq on UM_NZW_1.0chr, D3G 24.03 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

XM_051850472.1|LOC100357836;100357836|chr8:9636919:10046910:-|prespliced::chr8:9636919-10046910(-)
position: 2812-2826

TCATTAGCATAATAGGTTTCAGAAAAGGTT2812TTCATTGACAACATTAGTGATAGTCAAGATATGTGTATTGCCTGT

XM_008260152.3|LOC100357836;100357836|chr8:9636919:10068464:-|prespliced::chr8:9636919-10068464(-)
position: 24366-24380

TCATTAGCATAATAGGTTTCAGAAAAGGTT24366TTCATTGACAACATTAGTGATAGTCAAGATATGTGTATTGCCTGT

XM_051850465.1|LOC100357836;100357836|chr8:9636919:10068464:-|prespliced::chr8:9636919-10068464(-)
position: 24366-24380

TCATTAGCATAATAGGTTTCAGAAAAGGTT24366TTCATTGACAACATTAGTGATAGTCAAGATATGTGTATTGCCTGT

XM_051850466.1|LOC100357836;100357836|chr8:9636919:10068464:-|prespliced::chr8:9636919-10068464(-)
position: 24366-24380

TCATTAGCATAATAGGTTTCAGAAAAGGTT24366TTCATTGACAACATTAGTGATAGTCAAGATATGTGTATTGCCTGT

XM_051850468.1|LOC100357836;100357836|chr8:9636919:10068464:-|prespliced::chr8:9636919-10068464(-)
position: 24366-24380

TCATTAGCATAATAGGTTTCAGAAAAGGTT24366TTCATTGACAACATTAGTGATAGTCAAGATATGTGTATTGCCTGT

XM_051850469.1|LOC100357836;100357836|chr8:9636919:10068464:-|prespliced::chr8:9636919-10068464(-)
position: 24366-24380

TCATTAGCATAATAGGTTTCAGAAAAGGTT24366TTCATTGACAACATTAGTGATAGTCAAGATATGTGTATTGCCTGT

XM_051850470.1|LOC100357836;100357836|chr8:9636919:10068464:-|prespliced::chr8:9636919-10068464(-)
position: 24366-24380

TCATTAGCATAATAGGTTTCAGAAAAGGTT24366TTCATTGACAACATTAGTGATAGTCAAGATATGTGTATTGCCTGT

XM_051850471.1|LOC100357836;100357836|chr8:9699885:10068464:-|prespliced::chr8:9699885-10068464(-)
position: 24366-24380

TCATTAGCATAATAGGTTTCAGAAAAGGTT24366TTCATTGACAACATTAGTGATAGTCAAGATATGTGTATTGCCTGT

XM_051850473.1|LOC100357836;100357836|chr8:9699885:10068464:-|prespliced::chr8:9699885-10068464(-)
position: 24366-24380

TCATTAGCATAATAGGTTTCAGAAAAGGTT24366TTCATTGACAACATTAGTGATAGTCAAGATATGTGTATTGCCTGT

XM_002713403.4|LOC100008708;100008708|chr9:92029629:92032404:+|prespliced::chr9:92029629-92032404(+)
position: 30-44

GAATGCTACACTCCAAATACTATTGTGTT30TTCATTGACAACATTCACTATTACATATGCATATGAACACCAGTC

XM_051847092.1|C1H9orf153;100342003|chr1:86246548:86253126:-|prespliced::chr1:86246548-86253126(-)
position: 5810-5824

AGAAACACATTGGGAATCTTGGAAGTGGAA5810AATGTTGTCAATGAAACCAAGAACCTTCCAAAATTATCCCAATTA

XM_008257491.3|C1H9orf153;100342003|chr1:86246548:86273702:-|prespliced::chr1:86246548-86273702(-)
position: 26386-26400

AGAAACACATTGGGAATCTTGGAAGTGGAA26386AATGTTGTCAATGAAACCAAGAACCTTCCAAAATTATCCCAATTA

XM_051847101.1|C1H9orf153;100342003|chr1:86246548:86273702:-|prespliced::chr1:86246548-86273702(-)
position: 26386-26400

AGAAACACATTGGGAATCTTGGAAGTGGAA26386AATGTTGTCAATGAAACCAAGAACCTTCCAAAATTATCCCAATTA

XM_008257487.3|C1H9orf153;100342003|chr1:86246548:86276381:-|prespliced::chr1:86246548-86276381(-)
position: 29065-29079

AGAAACACATTGGGAATCTTGGAAGTGGAA29065AATGTTGTCAATGAAACCAAGAACCTTCCAAAATTATCCCAATTA

XM_051847112.1|C1H9orf153;100342003|chr1:86246548:86276382:-|prespliced::chr1:86246548-86276382(-)
position: 29066-29080

AGAAACACATTGGGAATCTTGGAAGTGGAA29066AATGTTGTCAATGAAACCAAGAACCTTCCAAAATTATCCCAATTA

XM_008257472.3|C1H9orf153;100342003|chr1:86246548:86287979:-|prespliced::chr1:86246548-86287979(-)
position: 40663-40677

AGAAACACATTGGGAATCTTGGAAGTGGAA40663AATGTTGTCAATGAAACCAAGAACCTTCCAAAATTATCCCAATTA

XM_051854304.1|LOC100340498;100340498|chr12:28690181:28936512:+|prespliced::chr12:28690181-28936512(+)
position: 174126-174140

CTGTAAAAATGGCTTGAAGATTGTTTAGTC174126AATGTTGTCAATGAAAAAAAAATGGCTTCTGTAATCAAGCTTAAT

XM_017349189.2|LOC100356654;100356654|chr19:38697358:38714878:+|prespliced::chr19:38697358-38714878(+)
position: 5247-5261

TCTCCTTTATCTTTTACAAGTTTATAGTAA5247AATGTTGTCAATGAAATCATACAATGACTGGATTTGCTCAGAAAT

XM_051825651.1|LOC100356654;100356654|chr19:38697358:38714878:+|prespliced::chr19:38697358-38714878(+)
position: 5247-5261

TCTCCTTTATCTTTTACAAGTTTATAGTAA5247AATGTTGTCAATGAAATCATACAATGACTGGATTTGCTCAGAAAT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

タブ区切りテキスト → 表示 | ダウンロード
エクセル等の表計算ソフトに直接コピペできます。
CSV形式 → 表示 | ダウンロード
エクセル等の表計算ソフトにて開くことができます。
BED形式 → リンク | ダウンロード
GFF形式 → リンク | ダウンロード
JSON形式 → リンク | ダウンロード

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/UM_NZW_1.0chr_RefSeq_prespliced_d3g2403/TTCATTGACAACATT
lang : ja | db : UM_NZW_1.0chr_RefSeq_prespliced_d3g2403 | k : 0 | strand : | nogap : | query_string : TTCATTGACAACATT | format : html | download : | debug :

0.009 | 0.009 | search_start;
0.084 | 0.075 | search_plus_done; http://172.18.8.77:28991/match?q=TTCATTGACAACATT&k=0&no_gap=0&offset=0&limit=50
0.096 | 0.012 | search_minus_done; http://172.18.8.77:28991/match?q=AATGTTGTCAATGAA&k=0&no_gap=0&offset=0&limit=40
0.103 | 0.007 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).