GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2024-11-22 23:55:38, GGGenome : Rabbit genome, UM_NZW_1.0chr, D3G 24.03 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

chr1
position: 86247303-86247317
TAATTGGGATAATTTTGGAAGGTTCTTGGT86247303TTCATTGACAACATTTTCCACTTCCAAGATTCCCAATGTGTTTCT
chr2
position: 9534465-9534479
GGTCATTCAAGAGAATGAGATTCTCCTGCC9534465TTCATTGACAACATTGGGTGAGAGATGTTGGAAAGAGTGAAGTCT
chr8
position: 23507462-23507476
TTTATGAATGACTTATAATCATCCTTCCAT23507462TTCATTGACAACATTTAATCAGTATCCATATAGTATTGATTCGTC
chr9
position: 92029659-92029673
AGAATGCTACACTCCAAATACTATTGTGTT92029659TTCATTGACAACATTCACTATTACATATGCATATGAACACCAGTC
chr16
position: 57537312-57537326
GCAACTATCTCACCTCCAGGATCAGGAGGA57537312TTCATTGACAACATTAGTTCTCCTGAACCACTGAGCACTATACCC
contig_3013
position: 5130575-5130589
TAAAAATGAACACTTATAGTTACTATCACT5130575TTCATTGACAACATTATTACTTGTAGGATCATTTTCATCCACACA
chr8
position: 10044085-10044099
ACAGGCAATACACATATCTTGACTATCACT10044085AATGTTGTCAATGAAAACCTTTTCTGAAACCTATTATGCTAATGA
chr11
position: 83503469-83503483
GAAAAATTTCTGAGGAAAATTTAGGTCATC83503469AATGTTGTCAATGAAAAGGGTTAAGGAAGAAATAGTCTAGTTCAT
chr12
position: 28864307-28864321
CTGTAAAAATGGCTTGAAGATTGTTTAGTC28864307AATGTTGTCAATGAAAAAAAAATGGCTTCTGTAATCAAGCTTAAT
chr12
position: 94635548-94635562
TCTGGGAAAGAGCTGAGGTGGTGGGGAGAG94635548AATGTTGTCAATGAAGCTAATTCAGGACAGGAGCAGGAGCGCTGG
chr13
position: 58483185-58483199
AGAGATTTTTTTCCTGCCAAGAATGATAGC58483185AATGTTGTCAATGAATGTAAAATTTTGTAAAGAAACCTATTCATC
chr14
position: 102792733-102792747
TTTTTTTTGTTTTTTCAATTTTTCTCATCT102792733AATGTTGTCAATGAAGAACTAACATACACTTTTGTAATTAGGAAA
chr19
position: 38702605-38702619
TCTCCTTTATCTTTTACAAGTTTATAGTAA38702605AATGTTGTCAATGAAATCATACAATGACTGGATTTGCTCAGAAAT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/UM_NZW_1.0chr_d3g2403/TTCATTGACAACATT
lang : en | db : UM_NZW_1.0chr_d3g2403 | k : 0 | strand : | nogap : | query_string : TTCATTGACAACATT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.082 | 0.073 | search_plus_done; http://172.18.8.77:28993/match?q=TTCATTGACAACATT&k=0&no_gap=0&offset=0&limit=50
0.090 | 0.008 | search_minus_done; http://172.18.8.77:28993/match?q=AATGTTGTCAATGAA&k=0&no_gap=0&offset=0&limit=44
0.095 | 0.005 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).