GGGenome | Results

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2025-04-09 11:45:24, GGGenome : Rabbit genome, UM_NZW_1.0chr, D3G 24.03 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

chr1
position: 86247303-86247317

TAATTGGGATAATTTTGGAAGGTTCTTGGT86247303TTCATTGACAACATTTTCCACTTCCAAGATTCCCAATGTGTTTCT

chr2
position: 9534465-9534479

GGTCATTCAAGAGAATGAGATTCTCCTGCC9534465TTCATTGACAACATTGGGTGAGAGATGTTGGAAAGAGTGAAGTCT

chr8
position: 23507462-23507476

TTTATGAATGACTTATAATCATCCTTCCAT23507462TTCATTGACAACATTTAATCAGTATCCATATAGTATTGATTCGTC

chr9
position: 92029659-92029673

AGAATGCTACACTCCAAATACTATTGTGTT92029659TTCATTGACAACATTCACTATTACATATGCATATGAACACCAGTC

chr16
position: 57537312-57537326

GCAACTATCTCACCTCCAGGATCAGGAGGA57537312TTCATTGACAACATTAGTTCTCCTGAACCACTGAGCACTATACCC

contig_3013
position: 5130575-5130589

TAAAAATGAACACTTATAGTTACTATCACT5130575TTCATTGACAACATTATTACTTGTAGGATCATTTTCATCCACACA

chr8
position: 10044085-10044099

ACAGGCAATACACATATCTTGACTATCACT10044085AATGTTGTCAATGAAAACCTTTTCTGAAACCTATTATGCTAATGA

chr11
position: 83503469-83503483

GAAAAATTTCTGAGGAAAATTTAGGTCATC83503469AATGTTGTCAATGAAAAGGGTTAAGGAAGAAATAGTCTAGTTCAT

chr12
position: 28864307-28864321

CTGTAAAAATGGCTTGAAGATTGTTTAGTC28864307AATGTTGTCAATGAAAAAAAAATGGCTTCTGTAATCAAGCTTAAT

chr12
position: 94635548-94635562

TCTGGGAAAGAGCTGAGGTGGTGGGGAGAG94635548AATGTTGTCAATGAAGCTAATTCAGGACAGGAGCAGGAGCGCTGG

chr13
position: 58483185-58483199

AGAGATTTTTTTCCTGCCAAGAATGATAGC58483185AATGTTGTCAATGAATGTAAAATTTTGTAAAGAAACCTATTCATC

chr14
position: 102792733-102792747

TTTTTTTTGTTTTTTCAATTTTTCTCATCT102792733AATGTTGTCAATGAAGAACTAACATACACTTTTGTAATTAGGAAA

chr19
position: 38702605-38702619

TCTCCTTTATCTTTTACAAGTTTATAGTAA38702605AATGTTGTCAATGAAATCATACAATGACTGGATTTGCTCAGAAAT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

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BED format: Link | Download
GFF format: Link | Download
JSON format: Link | Download

Debug Info:

0.009 | 0.009 | search_start;
0.082 | 0.073 | search_plus_done; http://172.18.8.77:28993/match?q=TTCATTGACAACATT&k=0&no_gap=0&offset=0&limit=50
0.089 | 0.008 | search_minus_done; http://172.18.8.77:28993/match?q=AATGTTGTCAATGAA&k=0&no_gap=0&offset=0&limit=44
0.094 | 0.005 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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